Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10f12
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638...    28   4.6  
10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700...    27   8.1  

>01_07_0353 +
           42962769-42962972,42963062-42963138,42963571-42963817,
           42963907-42964476,42964998-42965171,42965514-42965640,
           42965719-42965828,42966707-42966907,42966999-42967966,
           42968110-42968358,42968760-42969105
          Length = 1090

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 321 DTCNTQGSVKKKRHIDVEFSKCLEED 244
           +TC T  ++   RH   E+S+CLE D
Sbjct: 271 ETCGTTSTITLFRHYIEEYSECLEGD 296


>10_03_0010 +
           7007694-7007888,7007994-7008059,7008161-7008334,
           7009232-7009306,7009384-7009510,7012280-7012371,
           7012496-7012566,7012683-7012792,7013016-7013053,
           7013825-7013960,7014382-7014456,7014574-7014697,
           7014917-7015013,7015426-7015451,7016180-7016255,
           7016499-7016636,7016735-7016872
          Length = 585

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -2

Query: 339 ERNKRKDTCNTQGSVKKKRHIDVEFSKCLEEDSHLFNFVDIPDDINLKASNNLDNVKEQI 160
           +  +R D C     VK  R+ D+EF+  +  D+  F      D ++       +N KE I
Sbjct: 133 DTKERTDQCTVNVEVKLGRNDDIEFA--VSPDALRFTTPKFSDFVSSDEMETFENGKEVI 190

Query: 159 -DFDNVIPASPTSRT 118
            D+ N   A  T  T
Sbjct: 191 LDYCNFRTACTTLPT 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,510,301
Number of Sequences: 37544
Number of extensions: 160839
Number of successful extensions: 363
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)