Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10f12
         (577 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53174-1|AAB39928.1|  391|Homo sapiens cell cycle checkpoint con...    45   2e-04
CR536508-1|CAG38746.1|  391|Homo sapiens RAD9A protein.                45   2e-04
BC014848-1|AAH14848.1|  391|Homo sapiens RAD9 homolog A (S. pomb...    45   2e-04
AY766122-1|AAU89725.1|  391|Homo sapiens RAD9 homolog A (S. pomb...    45   2e-04
BC068031-1|AAH68031.2|  426|Homo sapiens RAD9B protein protein.        33   0.72 
BC047645-1|AAH47645.1|  259|Homo sapiens RAD9 homolog B (S. cere...    33   0.72 
AY297459-1|AAQ62859.1|  414|Homo sapiens RAD9B protein.                33   0.72 
AK124109-1|BAC85774.1|  345|Homo sapiens protein ( Homo sapiens ...    33   0.72 
AK058176-1|BAB71704.1|  271|Homo sapiens protein ( Homo sapiens ...    33   0.72 
AK097665-1|BAC05138.1|  259|Homo sapiens protein ( Homo sapiens ...    33   0.95 

>U53174-1|AAB39928.1|  391|Homo sapiens cell cycle checkpoint
           control protein protein.
          Length = 391

 Score = 44.8 bits (101), Expect = 2e-04
 Identities = 23/55 (41%), Positives = 30/55 (54%)
 Frame = -2

Query: 558 EETTITFTLKEFRXXXXXXXXXXXXLQLHFETTGRPAVFIVHNGTTFEAHFVLAT 394
           E   ITF LKEFR            L +HF+  GRPA+F + + +  + HFVLAT
Sbjct: 211 EGVAITFCLKEFRGLLSFAESANLNLSIHFDAPGRPAIFTIKD-SLLDGHFVLAT 264


>CR536508-1|CAG38746.1|  391|Homo sapiens RAD9A protein.
          Length = 391

 Score = 44.8 bits (101), Expect = 2e-04
 Identities = 23/55 (41%), Positives = 30/55 (54%)
 Frame = -2

Query: 558 EETTITFTLKEFRXXXXXXXXXXXXLQLHFETTGRPAVFIVHNGTTFEAHFVLAT 394
           E   ITF LKEFR            L +HF+  GRPA+F + + +  + HFVLAT
Sbjct: 211 EGVAITFCLKEFRGLLSFAESANLNLSIHFDAPGRPAIFTIKD-SLLDGHFVLAT 264


>BC014848-1|AAH14848.1|  391|Homo sapiens RAD9 homolog A (S. pombe)
           protein.
          Length = 391

 Score = 44.8 bits (101), Expect = 2e-04
 Identities = 23/55 (41%), Positives = 30/55 (54%)
 Frame = -2

Query: 558 EETTITFTLKEFRXXXXXXXXXXXXLQLHFETTGRPAVFIVHNGTTFEAHFVLAT 394
           E   ITF LKEFR            L +HF+  GRPA+F + + +  + HFVLAT
Sbjct: 211 EGVAITFCLKEFRGLLSFAESANLNLSIHFDAPGRPAIFTIKD-SLLDGHFVLAT 264


>AY766122-1|AAU89725.1|  391|Homo sapiens RAD9 homolog A (S. pombe)
           protein.
          Length = 391

 Score = 44.8 bits (101), Expect = 2e-04
 Identities = 23/55 (41%), Positives = 30/55 (54%)
 Frame = -2

Query: 558 EETTITFTLKEFRXXXXXXXXXXXXLQLHFETTGRPAVFIVHNGTTFEAHFVLAT 394
           E   ITF LKEFR            L +HF+  GRPA+F + + +  + HFVLAT
Sbjct: 211 EGVAITFCLKEFRGLLSFAESANLNLSIHFDAPGRPAIFTIKD-SLLDGHFVLAT 264


>BC068031-1|AAH68031.2|  426|Homo sapiens RAD9B protein protein.
          Length = 426

 Score = 33.1 bits (72), Expect = 0.72
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -2

Query: 576 DNYIIGEETTITFTLKEFRXXXXXXXXXXXXLQLHFETTGRPAVFIVHNGTTFEAHFVLA 397
           D + IG +T ITF  KE +            + ++F+  G+P    + +    EA+F+LA
Sbjct: 213 DFFQIGMDTEITFCFKELKGILTFSEATHAPISIYFDFPGKPLALSI-DDMLVEANFILA 271

Query: 396 T 394
           T
Sbjct: 272 T 272


>BC047645-1|AAH47645.1|  259|Homo sapiens RAD9 homolog B (S.
           cerevisiae) protein.
          Length = 259

 Score = 33.1 bits (72), Expect = 0.72
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -2

Query: 576 DNYIIGEETTITFTLKEFRXXXXXXXXXXXXLQLHFETTGRPAVFIVHNGTTFEAHFVLA 397
           D + IG +T ITF  KE +            + ++F+  G+P    + +    EA+F+LA
Sbjct: 58  DFFQIGMDTEITFCFKELKGILTFSEATHAPISIYFDFPGKPLALSI-DDMLVEANFILA 116

Query: 396 T 394
           T
Sbjct: 117 T 117


>AY297459-1|AAQ62859.1|  414|Homo sapiens RAD9B protein.
          Length = 414

 Score = 33.1 bits (72), Expect = 0.72
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -2

Query: 576 DNYIIGEETTITFTLKEFRXXXXXXXXXXXXLQLHFETTGRPAVFIVHNGTTFEAHFVLA 397
           D + IG +T ITF  KE +            + ++F+  G+P    + +    EA+F+LA
Sbjct: 213 DFFQIGMDTEITFCFKELKGILTFSEATHAPISIYFDFPGKPLALSI-DDMLVEANFILA 271

Query: 396 T 394
           T
Sbjct: 272 T 272


>AK124109-1|BAC85774.1|  345|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42115 fis, clone TESTI2003573, weakly  similar
           to Mus musculus cell cycle checkpoint control protein
           Mrad9 gene. ).
          Length = 345

 Score = 33.1 bits (72), Expect = 0.72
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -2

Query: 576 DNYIIGEETTITFTLKEFRXXXXXXXXXXXXLQLHFETTGRPAVFIVHNGTTFEAHFVLA 397
           D + IG +T ITF  KE +            + ++F+  G+P    + +    EA+F+LA
Sbjct: 144 DFFQIGMDTEITFCFKELKGILTFSEATHAPISIYFDFPGKPLALSI-DDMLVEANFILA 202

Query: 396 T 394
           T
Sbjct: 203 T 203


>AK058176-1|BAB71704.1|  271|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25447 fis, clone TST08747. ).
          Length = 271

 Score = 33.1 bits (72), Expect = 0.72
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -2

Query: 576 DNYIIGEETTITFTLKEFRXXXXXXXXXXXXLQLHFETTGRPAVFIVHNGTTFEAHFVLA 397
           D + IG +T ITF  KE +            + ++F+  G+P    + +    EA+F+LA
Sbjct: 58  DFFQIGMDTEITFCFKELKGILTFSEATHAPISIYFDFPGKPLALSI-DDMLVEANFILA 116

Query: 396 T 394
           T
Sbjct: 117 T 117


>AK097665-1|BAC05138.1|  259|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40346 fis, clone TESTI2033242. ).
          Length = 259

 Score = 32.7 bits (71), Expect = 0.95
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -2

Query: 576 DNYIIGEETTITFTLKEFRXXXXXXXXXXXXLQLHFETTGRPAVFIVHNGTTFEAHFVLA 397
           D + IG +T ITF  KE +            + ++F+  G+P    + +    EA+F+LA
Sbjct: 58  DFFQIGMDTEITFYFKELKGILTFSEATHAPISIYFDFPGKPLALSI-DDMLVEANFILA 116

Query: 396 T 394
           T
Sbjct: 117 T 117


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,370,941
Number of Sequences: 237096
Number of extensions: 901890
Number of successful extensions: 6067
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6067
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)