Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10f11
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    31   0.20 
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    31   0.20 
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.7  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    25   7.7  

>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 404 GCKKGSYEEHIPAIHNEELSRHAQEQSGAHVRSTA*SYYVSNLAP 538
           GC +G+  +HIP  HN E +++           T     +S++AP
Sbjct: 289 GCAQGALPQHIPVPHNTEFAQYQPSSRDLQNHPTVDESRLSSVAP 333


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +2

Query: 443 IHNEELSRHAQEQSGAHVRSTA*SYYVSNLAPIQIDFIQ 559
           I+NE+L     E SG +    A + Y+S +AP+++DF+Q
Sbjct: 58  INNEDLEDGTVEISG-YDNLLADALYISTIAPVKLDFVQ 95


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -2

Query: 493 MCARLFLGVAGQFFIMNSRYMFFIGALFAAAFRLVMIQFTTYLPLLILTG--ILGALRSL 320
           + +R+F GVA   F+ + RY F   AL +  +R  M    + +  L LT    +G L + 
Sbjct: 150 LVSRIFTGVACTMFLYHKRY-FTDKALISIKYRTSMGVVNSVMATLGLTAGPFIGGLMAK 208

Query: 319 VHSAAYSD 296
               + SD
Sbjct: 209 SSMKSQSD 216


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 416 GSYEEHIPAIHNEELSRHAQEQSGAHVRST 505
           GSY EH+P +H   +     + +GA +  T
Sbjct: 90  GSYAEHVPVVHIVGMPSTKVQDTGALLHHT 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,426
Number of Sequences: 5004
Number of extensions: 61373
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)