Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10f11
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0371 + 28819035-28819322,28820541-28820595,28821179-288213... 31 0.64
02_02_0564 - 11526906-11527171,11527509-11527683,11527762-11527773 30 1.5
10_06_0177 + 11500330-11500755,11500937-11501383,11501651-11501764 29 3.4
12_02_0738 + 22669557-22669756,22669868-22669916,22670620-226706... 29 4.5
07_03_1505 - 27046018-27046283,27046621-27046795,27048157-270481... 28 6.0
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 28 7.9
05_07_0282 + 28934359-28936458 28 7.9
04_03_0456 + 16096467-16096585,16096687-16096965,16097087-160971... 28 7.9
04_03_0241 - 13243938-13244453,13244538-13246334 28 7.9
>01_06_0371 +
28819035-28819322,28820541-28820595,28821179-28821354,
28821481-28821702,28821796-28822034,28822107-28822632,
28822726-28822999,28823098-28823737,28823833-28824061,
28824299-28824565,28824700-28824963,28825045-28825689
Length = 1274
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -3
Query: 246 MLLAGAISLSVGPMIGFIRDFTGSYVVAFV---MLAVCNLCCVVPWAI 112
+L+ AI VG + + F G +VVAFV +L++ L C+ P I
Sbjct: 164 VLVQDAIGEKVGKFLQLVATFAGGFVVAFVKGWLLSLVMLACIPPVVI 211
>02_02_0564 - 11526906-11527171,11527509-11527683,11527762-11527773
Length = 150
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 364 PLLILTGILGALRSLVHSAAYSDG*TRSHRAVPIGLWTLH 245
P L++T +L + S+ +AAY+DG T H + WT H
Sbjct: 43 PCLLVTDVLDS-PSVPATAAYADGLTMDHPIMTTEFWTSH 81
>10_06_0177 + 11500330-11500755,11500937-11501383,11501651-11501764
Length = 328
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 398 KSGCKKGSYEEHIPAIHNEELSRHAQEQSGAHVRST 505
+ GCK GS EE A+H E L R +EQ+ A +++
Sbjct: 293 EDGCKLGSVEEIATAVH-EILERMQEEQAFADAKTS 327
>12_02_0738 +
22669557-22669756,22669868-22669916,22670620-22670657,
22670977-22671058,22671146-22671195,22671381-22671847,
22671992-22672155,22672242-22672448,22672554-22672710,
22672858-22672965,22673161-22673234,22673364-22673521,
22673728-22673788,22673858-22673965
Length = 640
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 58 AHVRISEFPFFFVTKNELYRPRNNAA*ITHSQHNESNHITTSEVPNESYHGSDTQTN 228
AH ++ + P FV KN + P + + N S+H ++PN+ G++ N
Sbjct: 429 AHAKLDDIPSDFVMKNNIPEPISPTSAAAAGPSNRSDH----QMPNQGTIGAENLCN 481
>07_03_1505 -
27046018-27046283,27046621-27046795,27048157-27048166,
27048446-27048639
Length = 214
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 364 PLLILTGILGALRSLVHSAAYSDG*TRSHRAVPIGLWTLH 245
P L +T +L + S+ +AAY+DG T H + WT H
Sbjct: 107 PCLPVTDVLDS-PSVPATAAYADGLTMDHPIMTTEFWTSH 145
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 197 NPIMGPTLKLIAPASNM*SP*ADGYSSMGTCSAITIGC 310
NP++GPT+ ++AP + S D G S ++ C
Sbjct: 672 NPMLGPTVLVLAPTRELASQIQDEAVKFGRSSRVSCTC 709
>05_07_0282 + 28934359-28936458
Length = 699
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 468 TPRNNLAHMSVAPPKAIMLAIWLRFKLTLSKNKGSKVKKVRSAKNVKAIPTMIL 629
+P N+AH +++ +SK+ GS VK+V SAK +P +++
Sbjct: 284 SPHPNVAHCRYCFHDEEKRELYMVMDQLMSKDLGSYVKEVNSAKRRAPLPLVVV 337
>04_03_0456 +
16096467-16096585,16096687-16096965,16097087-16097125,
16110110-16110773
Length = 366
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 413 FCSRF*IGYDTIHNIPTSTN 354
FCSR+ G+ T HN+P+ N
Sbjct: 71 FCSRYLEGFPTKHNLPSRNN 90
>04_03_0241 - 13243938-13244453,13244538-13246334
Length = 770
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 504 PPKAIMLAIWLRFKLTLSKNKGSKVKKVRSAKNVKAIPTM 623
PP +A+ R KL N G+K + R AK A+PTM
Sbjct: 648 PPPIRKVAVGRRVKLRKQYNTGAKRRSARIAKQ-PALPTM 686
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,568,400
Number of Sequences: 37544
Number of extensions: 391700
Number of successful extensions: 811
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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