Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10f11
(683 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical p... 42 3e-04
AF125952-1|AAD14701.1| 571|Caenorhabditis elegans Hypothetical ... 39 0.003
AC006722-7|AAK68412.2| 544|Caenorhabditis elegans Hypothetical ... 39 0.003
U29379-7|ABC71826.1| 710|Caenorhabditis elegans Patterned expre... 37 0.012
U29379-6|AAF99981.3| 677|Caenorhabditis elegans Patterned expre... 37 0.012
U29379-5|ABC71825.1| 777|Caenorhabditis elegans Patterned expre... 37 0.012
AF026202-6|AAB71245.2| 594|Caenorhabditis elegans Hypothetical ... 36 0.027
Z78545-2|CAB01766.1| 596|Caenorhabditis elegans Hypothetical pr... 33 0.25
AF016679-5|AAB66157.1| 485|Caenorhabditis elegans Hypothetical ... 30 1.8
Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical p... 29 3.1
Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical pr... 29 3.1
AC006673-11|AAF39920.1| 311|Caenorhabditis elegans Hypothetical... 29 3.1
AC006670-3|ABC71823.1| 350|Caenorhabditis elegans Patched relat... 29 3.1
AC006670-2|ABC71822.1| 901|Caenorhabditis elegans Patched relat... 29 3.1
U41274-1|AAA82458.1| 188|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z70206-2|CAA94126.2| 771|Caenorhabditis elegans Hypothetical pr... 27 9.4
>U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical
protein T02G5.12 protein.
Length = 556
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/90 (26%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Frame = -3
Query: 303 IVMAEHVPIELYPSAYGLYMLLAGAISLSVGPMI-GFIRDFTGSYVVAFVMLAVCNLCCV 127
+++ + + ++ +A+GL +L G + +GP++ G++ D TG+Y ++FV C + +
Sbjct: 473 VILVDLLGLDKLTNAFGLLLLWQG-VGTVIGPLVSGYLADLTGNYTLSFVF---CGINLM 528
Query: 126 VPWAIEFIFRYKKERKLRNTDVS*KHEASK 37
V + F+ Y K + + DVS K +S+
Sbjct: 529 VSGLMLFVIPYFKRKD--DVDVSNKQRSSQ 556
>AF125952-1|AAD14701.1| 571|Caenorhabditis elegans Hypothetical
protein C01B4.9 protein.
Length = 571
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = -3
Query: 327 GLWCIA--QPIVMAEHVPIELYPSAYGLYMLLAGAISLSVGPMIGFIRDFTGSYVVAFVM 154
G+ C A + ++ E + +E +A+G+ M+ G ++ GP+ I+D TG+Y ++F +
Sbjct: 471 GVACFAALRSVICVELIGVEKLSNAFGILMVFMGIGAVVGGPIAAQIKDITGNYDISFYV 530
Query: 153 LAV 145
+ +
Sbjct: 531 MGI 533
>AC006722-7|AAK68412.2| 544|Caenorhabditis elegans Hypothetical
protein Y19D10A.12 protein.
Length = 544
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = -3
Query: 327 GLWCIA--QPIVMAEHVPIELYPSAYGLYMLLAGAISLSVGPMIGFIRDFTGSYVVAFVM 154
G+ C A + ++ E + +E +A+G+ M+ G ++ GP+ I+D TG+Y ++F +
Sbjct: 444 GVACFAALRSVICVELIGVEKLSNAFGILMVFMGIGAVVGGPIAAQIKDITGNYDISFYV 503
Query: 153 LAV 145
+ +
Sbjct: 504 MGI 506
>U29379-7|ABC71826.1| 710|Caenorhabditis elegans Patterned
expression site protein22, isoform c protein.
Length = 710
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = -3
Query: 360 Y*Y*LVYSEP*GLWCIAQPIVMAEHVPIELYPSAYGLYMLLAGAISLSVGPMIGFIRDFT 181
Y Y +V+ + IV+A+ + +E +++GL ++ G SL P G + D T
Sbjct: 605 YFYAIVFGFIISAYICLTSIVLADLMGLENLTNSFGLLVVARGIASLVGPPFAGIVYDIT 664
Query: 180 GSYVVAF 160
GSY AF
Sbjct: 665 GSYDTAF 671
>U29379-6|AAF99981.3| 677|Caenorhabditis elegans Patterned
expression site protein22, isoform a protein.
Length = 677
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = -3
Query: 360 Y*Y*LVYSEP*GLWCIAQPIVMAEHVPIELYPSAYGLYMLLAGAISLSVGPMIGFIRDFT 181
Y Y +V+ + IV+A+ + +E +++GL ++ G SL P G + D T
Sbjct: 550 YFYAIVFGFIISAYICLTSIVLADLMGLENLTNSFGLLVVARGIASLVGPPFAGIVYDIT 609
Query: 180 GSYVVAF 160
GSY AF
Sbjct: 610 GSYDTAF 616
>U29379-5|ABC71825.1| 777|Caenorhabditis elegans Patterned
expression site protein22, isoform b protein.
Length = 777
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = -3
Query: 360 Y*Y*LVYSEP*GLWCIAQPIVMAEHVPIELYPSAYGLYMLLAGAISLSVGPMIGFIRDFT 181
Y Y +V+ + IV+A+ + +E +++GL ++ G SL P G + D T
Sbjct: 605 YFYAIVFGFIISAYICLTSIVLADLMGLENLTNSFGLLVVARGIASLVGPPFAGIVYDIT 664
Query: 180 GSYVVAF 160
GSY AF
Sbjct: 665 GSYDTAF 671
>AF026202-6|AAB71245.2| 594|Caenorhabditis elegans Hypothetical
protein C10E2.6 protein.
Length = 594
Score = 35.9 bits (79), Expect = 0.027
Identities = 14/53 (26%), Positives = 32/53 (60%)
Frame = -3
Query: 303 IVMAEHVPIELYPSAYGLYMLLAGAISLSVGPMIGFIRDFTGSYVVAFVMLAV 145
+++ + + ++ +A+GL +L G ++ P+ G++ D TG+Y ++FV V
Sbjct: 514 VILVDLLGLDKLTNAFGLLLLWQGVGTVFGPPVSGYLADMTGNYTLSFVFCGV 566
>Z78545-2|CAB01766.1| 596|Caenorhabditis elegans Hypothetical
protein M03B6.2 protein.
Length = 596
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/61 (22%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = -3
Query: 327 GLWCIA--QPIVMAEHVPIELYPSAYGLYMLLAGAISLSVGPMIGFIRDFTGSYVVAFVM 154
G+ C A + I++ E + +E +A+G+ + G ++ P+ ++D+TG++ +F +
Sbjct: 489 GVACFAALRSIIVVELIGLEKLSNAFGILLTFMGVGAVVGSPLAAAMKDYTGNFDTSFYV 548
Query: 153 L 151
+
Sbjct: 549 M 549
>AF016679-5|AAB66157.1| 485|Caenorhabditis elegans Hypothetical
protein T28C12.2 protein.
Length = 485
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -3
Query: 234 GAISLSVGPMIGFIRDFTGSYVVAFVMLAVCNLCCVVPWAIEFIF 100
GA +S+GP++ F VVA++M +C L CVV I F+F
Sbjct: 188 GAYGISIGPIV-----FNMFTVVAYLMALICFLSCVV---IYFLF 224
>Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical
protein AH6.1 protein.
Length = 1137
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -3
Query: 249 YMLLAGAISLSVGPM--IGFIRDFTGSYVVAFVMLAVCNLCCVVPWAIEFIFRYK 91
+ + GA+ L++ + +GF++DF Y+V + C+L VV +EFI +K
Sbjct: 51 WSVCGGAVPLAIERLKEMGFVKDFDFEYIVDY---TECDLGSVVRAGMEFIKTHK 102
>Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical
protein AH6.1 protein.
Length = 1137
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -3
Query: 249 YMLLAGAISLSVGPM--IGFIRDFTGSYVVAFVMLAVCNLCCVVPWAIEFIFRYK 91
+ + GA+ L++ + +GF++DF Y+V + C+L VV +EFI +K
Sbjct: 51 WSVCGGAVPLAIERLKEMGFVKDFDFEYIVDY---TECDLGSVVRAGMEFIKTHK 102
>AC006673-11|AAF39920.1| 311|Caenorhabditis elegans Hypothetical
protein K09D9.3 protein.
Length = 311
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = -3
Query: 288 HVPIEL--YPSAYGLYMLLAGAISLSVGPMIGFIRDFTGSYVVA-FVMLAVCNLCCVV-- 124
H P E+ + Y + +L I L V I ++ FTG ++ ++ C L ++
Sbjct: 26 HPPFEIISFLFCYNVVSVLL-FIGLLVWKQINLLQHFTGFIILLPIAIITDCLLYLIIKH 84
Query: 123 PWAIEFIFRYKKER 82
P IEF++RY K R
Sbjct: 85 PNLIEFLYRYPKYR 98
>AC006670-3|ABC71823.1| 350|Caenorhabditis elegans Patched related
family protein12, isoform b protein.
Length = 350
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/63 (23%), Positives = 35/63 (55%)
Frame = +3
Query: 201 LSWVRHSN*SLRRVTCRVHKPMGTALWERVQPSL*AALCTKDLKAPSIPVNISRGRYVVN 380
+S+ H++ S + R+HK + + + +Q ++ +LC LK SI ++ + + ++
Sbjct: 253 ISYHYHTSPSDNGIRHRLHKTLSSVGFPALQATVSTSLCVLSLKFSSIYMSCAFVKTMIT 312
Query: 381 CII 389
C+I
Sbjct: 313 CMI 315
>AC006670-2|ABC71822.1| 901|Caenorhabditis elegans Patched related
family protein12, isoform a protein.
Length = 901
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/63 (23%), Positives = 35/63 (55%)
Frame = +3
Query: 201 LSWVRHSN*SLRRVTCRVHKPMGTALWERVQPSL*AALCTKDLKAPSIPVNISRGRYVVN 380
+S+ H++ S + R+HK + + + +Q ++ +LC LK SI ++ + + ++
Sbjct: 804 ISYHYHTSPSDNGIRHRLHKTLSSVGFPALQATVSTSLCVLSLKFSSIYMSCAFVKTMIT 863
Query: 381 CII 389
C+I
Sbjct: 864 CMI 866
>U41274-1|AAA82458.1| 188|Caenorhabditis elegans Hypothetical
protein T04G9.5 protein.
Length = 188
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Frame = +1
Query: 94 VTKNELYRPRN------NAA*ITHSQHNESNHITTSEVPNESY 204
VT + + RPR AA +T+ NE++H+T + P E Y
Sbjct: 94 VTHSVVIRPRAFGFFNYTAAQVTYYTDNENHHVTLTNTPGEGY 136
>Z70206-2|CAA94126.2| 771|Caenorhabditis elegans Hypothetical
protein C49F8.2 protein.
Length = 771
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/68 (20%), Positives = 29/68 (42%)
Frame = -3
Query: 303 IVMAEHVPIELYPSAYGLYMLLAGAISLSVGPMIGFIRDFTGSYVVAFVMLAVCNLCCVV 124
+ + EH + S M L+ + L + P+ G + D G + + ++C + C++
Sbjct: 98 VKIQEHFQCGRFVSMITASMFLS--LPLIMSPVAGIVSDILGCRMSIIIGASICTVSCII 155
Query: 123 PWAIEFIF 100
IF
Sbjct: 156 AMFCSHIF 163
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,998,051
Number of Sequences: 27780
Number of extensions: 345725
Number of successful extensions: 867
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -