Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10f11
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   3.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   4.7  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   8.3  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   8.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.3  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 173 MWLLSLCWLCVIYAALFRG 117
           +WL+SL W  ++  AL  G
Sbjct: 6   IWLVSLYWYLILQIALVYG 24


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 244 HVESISRWVQLYGNVFSHHYRL 309
           HV+   ++   YGN FS  Y +
Sbjct: 422 HVQETDKYDAYYGNRFSGEYEI 443


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -2

Query: 469 VAGQFFIMNSRYMFFIGALFAAAFRLVMIQFTTYLPLLILTGILGALRSL 320
           VAGQF       + F   L     +LV I    Y P  I+  I G + S+
Sbjct: 253 VAGQFGAQGKLIVDFFMILNEIIMKLVGIIIMWYSPFGIMCLIAGKIMSI 302


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 558 KNKGSKVKKVRSAKNVKAIPTM 623
           +NK +K+KK    KN  A+  M
Sbjct: 69  QNKRAKIKKASGQKNPLALQLM 90


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 558 KNKGSKVKKVRSAKNVKAIPTM 623
           +NK +K+KK    KN  A+  M
Sbjct: 69  QNKRAKIKKASGQKNPLALQLM 90


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -1

Query: 182 LVVMWLLSLC 153
           ++V+WLL+LC
Sbjct: 175 IIVIWLLALC 184


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 454  RTVPPRPGTIWRTC 495
            R +PP PG+ + TC
Sbjct: 1651 RKLPPVPGSNYNTC 1664


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,911
Number of Sequences: 438
Number of extensions: 4175
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)