Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10f07
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    79   6e-16
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...    28   1.1  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    28   1.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   5.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   5.9  

>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 79.0 bits (186), Expect = 6e-16
 Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
 Frame = -3

Query: 650 PGMWERTITVGSAGKTFSVTGWKIGWAYGPADLMRNLQVVHQNCVYTCCTPVEEAVARSF 471
           P +++  +TVGS GKTF  TGW++GW  G   L++     H    +   +P +EA+A +F
Sbjct: 235 PELFKHVVTVGSGGKTFGCTGWRVGWLIGDESLIKYSAAAHTRICFAVNSPCQEALAIAF 294

Query: 470 EYELARRDSPDCYFYSLARELRPKRDYLMKILKENGFKPTLPEAGYFVVADWTDLE--KK 297
             E  + +    Y+       + + + L K   +     T+P+  Y+ +A+++ L+  K 
Sbjct: 295 G-EAEKHN----YYEEYKSSYKKRFEILAKAFDQLEIPYTIPDGSYYTMANFSKLKLPKD 349

Query: 296 IDLSSEL-XXXXXXXXXXXXXKEAGVLAIPPSAFYSEAHKHLGETFARFCF 147
                E+              KE GV  IPP+ FY++    + E + RF F
Sbjct: 350 YPFPEEIANRPRDFKLCYWILKEIGVATIPPTEFYTDEDAPVAENYLRFAF 400


>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 389 LMKILKENGFKPTLPEAGYFVVADWTDLEKKID 291
           +M+ILK NG  P LPE  Y ++     + K ++
Sbjct: 71  IMRILKANGLAPELPEDLYNLIKKAVSVRKHLE 103


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 529 CTTCRFLIRSAGPYAHPIFHPVTEN 603
           C  C    +  GP +H  FH +TEN
Sbjct: 89  CLVCGRYFQGRGPSSHAYFHALTEN 113


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 337  GTLSWPIGLTWKRRSTYRANWTNTKITSSQRNSLKR 230
            G  SW  GL W++ S +  +    K+T++QR+ L +
Sbjct: 1518 GFPSWE-GLFWEKASGFEESMKFKKLTNAQRSGLNQ 1552


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -3

Query: 449  DSPDCYFYSLARELRPKRDYLMKILKENGFKPTLPEAGYFVVADWTDLEKKI 294
            DS DCY  SL      K        + N   P  PE   ++   W D+ KK+
Sbjct: 3724 DSYDCYLSSLLETSNAKISS-----RPNVLMPNQPEVKQYIPNVWNDVLKKL 3770


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,337
Number of Sequences: 5004
Number of extensions: 45713
Number of successful extensions: 167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)