Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10f07
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591 99 4e-21
10_08_0422 - 17796916-17797167,17797328-17797453,17797546-177977... 75 5e-14
01_06_1496 + 37772838-37772935,37773039-37773243,37773649-377737... 54 1e-07
02_02_0576 + 11730171-11730466,11733096-11733435,11733530-117337... 35 0.070
11_06_0535 - 24740950-24741089,24741358-24741451,24741535-247416... 30 1.5
02_02_0578 + 11745811-11746013,11749902-11750241,11750325-117505... 30 1.5
02_02_0597 - 11996350-11996483,11997511-11997604,11997877-119980... 29 2.6
03_02_0010 + 4903473-4903525,4904117-4904175,4904285-4904355,490... 29 3.5
11_06_0060 - 19695338-19695477,19695641-19695734,19695818-196959... 29 4.6
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 28 8.0
>09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591
Length = 455
Score = 98.7 bits (235), Expect = 4e-21
Identities = 62/169 (36%), Positives = 84/169 (49%), Gaps = 1/169 (0%)
Frame = -3
Query: 650 PGMWERTITVGSAGKTFSVTGWKIGWAYGPADLMRNLQVVHQNCVYTCCTPVEEAVARSF 471
PGM+ERT+T+ S GKTFS+TGWKIGWA P L ++ H + CTP++ A A +
Sbjct: 286 PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATCTPMQAAAAAAL 345
Query: 470 EYELARRDSPDCYFYSLARELRPKRDYLMKILKENGFKPTLPEAG-YFVVADWTDLEKKI 294
+PD Y+ L R+ K+ L+ LK+ GF P +G YFV+ D T
Sbjct: 346 R-------APDSYYEELRRDYGAKKALLVNGLKDAGF-IVYPSSGTYFVMVDHTPFGFDN 397
Query: 293 DLSSELXXXXXXXXXXXXXKEAGVLAIPPSAFYSEAHKHLGETFARFCF 147
D+ +E GV+AIPPS FY G+ RF F
Sbjct: 398 DIE----------FCEYLIREVGVVAIPPSVFYLNPED--GKNLVRFTF 434
>10_08_0422 -
17796916-17797167,17797328-17797453,17797546-17797700,
17797793-17797907,17798022-17798118,17798274-17798368,
17798500-17798585,17798689-17798819,17798909-17799090
Length = 412
Score = 74.9 bits (176), Expect = 5e-14
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Frame = -3
Query: 650 PGMWERTITVGSAGKTFSVTGWKIGWAYGPADLMRNLQVVHQNCVYTCCTPVEEAVARSF 471
PGM ERTI S KT+SVTGW+IGWA PA++ ++ +H + P +EA
Sbjct: 216 PGMQERTIITSSLSKTYSVTGWRIGWACAPANIASAIRNIHVKLTDSAPAPFQEAA---- 271
Query: 470 EYELARRDSPDCYFYSLARELRPKRDYLMKILKENGFKPTL-PEAGYFVVAD 318
L SP ++ SL ++ +RD+++++L + GF+ + P+ FV +
Sbjct: 272 ---LVALTSPPDFYSSLKQDYTARRDFILQVLTDFGFRISFKPQGSIFVFVE 320
>01_06_1496 +
37772838-37772935,37773039-37773243,37773649-37773742,
37773830-37773933,37774370-37774618,37774706-37774819,
37775010-37775093,37775292-37775462,37775544-37775657,
37775751-37775894
Length = 458
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Frame = -3
Query: 650 PGMWERTITVGSAGKTFSVTGWKIGWAYGPADLMRNLQVVHQNCVYTCCTPVEEAVARSF 471
PGMW+RT+TV K F++TGW++G+ P + + + ++A +
Sbjct: 274 PGMWDRTLTVNGFSKAFAMTGWRLGYLAAPKHFVAACGKIQSQFTSGASSISQKAGLAAL 333
Query: 470 EYELARRDSPDCYFYSLARELRPKRDYLMKILKE-NGFKPTLPEAGYFVVADWT 312
A ++ ++ + + +RDYL+K KE G K + P+ +++ D++
Sbjct: 334 NLGYAGGEAVS----TMVKAFQERRDYLVKSFKELPGVKISEPQGAFYLFIDFS 383
>02_02_0576 +
11730171-11730466,11733096-11733435,11733530-11733748,
11734687-11734746,11734847-11735096,11735314-11735441
Length = 430
Score = 34.7 bits (76), Expect = 0.070
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Frame = -3
Query: 629 ITVGSAGKTFSVTGWKIGW--AYGPADLMRNLQVVHQNCVYTCCT--PVEEAVARSFEYE 462
+T+G K + V GW++GW A P ++RN +++ Y + PV V +
Sbjct: 253 MTLGGISKRWMVPGWRLGWIAATDPNGILRNKKIIDSVIDYRAISVDPV-TFVQGALPDI 311
Query: 461 LARRDSPDCYFYSLARELRPKRDYLMKILKENG--FKPTLPEAGYFVVADWTDLEKKIDL 288
LA+ D D +F + ++ + + LKE P PE FV+A K+DL
Sbjct: 312 LAKTD--DAFFTNALGVVKKAAEICYEKLKEIDCITCPHKPEGSMFVMA-------KLDL 362
Query: 287 SS 282
SS
Sbjct: 363 SS 364
>11_06_0535 -
24740950-24741089,24741358-24741451,24741535-24741690,
24741782-24741841,24741930-24742142,24742423-24742492,
24746129-24746463,24747616-24747647,24747749-24747776
Length = 375
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 629 ITVGSAGKTFSVTGWKIGW 573
IT+G+ K F + GW++GW
Sbjct: 196 ITIGALSKKFMLPGWRLGW 214
>02_02_0578 +
11745811-11746013,11749902-11750241,11750325-11750543,
11751043-11751102,11751262-11751417,11751518-11751611,
11751914-11751927
Length = 361
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 4/106 (3%)
Frame = -3
Query: 629 ITVGSAGKTFSVTGWKIGW--AYGPADLMRNLQVVHQNCVYTCCTPVEEAVARSFEYELA 456
IT+GS K + V GW++GW P +++ +V Y + + ++
Sbjct: 222 ITLGSISKRWLVPGWRLGWIATCDPNGILKEAKVNQSIENYINISTDPATFVQGAIPQII 281
Query: 455 RRDSPDCYFYSLARELRPKRDYLMKILKE-NGFK-PTLPEAGYFVV 324
D YF + +LR D +K+ G P PE FV+
Sbjct: 282 ANTKED-YFNKILDQLRNAADLCYDKIKDIKGITCPHKPEGSMFVM 326
>02_02_0597 -
11996350-11996483,11997511-11997604,11997877-11998032,
11998580-11998639,11998733-11998951,11999038-11999377,
12001240-12001571
Length = 444
Score = 29.5 bits (63), Expect = 2.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 629 ITVGSAGKTFSVTGWKIGW 573
+T+GS K + V GW++GW
Sbjct: 265 LTIGSLSKRWIVPGWRLGW 283
>03_02_0010 +
4903473-4903525,4904117-4904175,4904285-4904355,
4904469-4904585,4907001-4907024,4907055-4907117,
4907303-4907407,4907552-4907602,4907702-4908535
Length = 458
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 650 PGMWERTITVGSAGKTFSVTGWKIGWAYGPADLM 549
PG E I V S K TG ++GWA P +L+
Sbjct: 287 PGAREVAIEVSSFSKFAGFTGVRLGWAVVPDELL 320
>11_06_0060 -
19695338-19695477,19695641-19695734,19695818-19695973,
19696109-19696168,19696384-19696602,19696607-19697036,
19698428-19698747
Length = 472
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 629 ITVGSAGKTFSVTGWKIGW 573
+T+GS K + V GW++GW
Sbjct: 291 LTLGSISKRWVVPGWRLGW 309
>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -3
Query: 602 FSVTGWKIGWAYGPA--DLMRNLQVVHQNCVYTCCTPVEEAV 483
F V K+G P D M++L V+ C+Y CC AV
Sbjct: 1607 FPVDDVKLGHLVNPQSQDTMKSLSVLKPPCLYKCCPVCFNAV 1648
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,193,085
Number of Sequences: 37544
Number of extensions: 324591
Number of successful extensions: 1062
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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