Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10f07
         (691 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001671-1|AAN71426.1|  242|Drosophila melanogaster RE50216p pro...   239   2e-63
AY094691-1|AAM11044.1|  450|Drosophila melanogaster GH08974p pro...   239   2e-63
AE014297-1394|AAO41545.1|  450|Drosophila melanogaster CG6950-PD...   239   2e-63
AE014297-1393|AAF54708.2|  450|Drosophila melanogaster CG6950-PC...   239   2e-63
AE014297-1392|AAF54707.2|  450|Drosophila melanogaster CG6950-PB...   239   2e-63
AE014297-1391|AAF54709.2|  450|Drosophila melanogaster CG6950-PA...   239   2e-63
AY113616-1|AAM29621.1|  112|Drosophila melanogaster RH63170p pro...    29   6.0  

>BT001671-1|AAN71426.1|  242|Drosophila melanogaster RE50216p
           protein.
          Length = 242

 Score =  239 bits (586), Expect = 2e-63
 Identities = 109/169 (64%), Positives = 129/169 (76%)
 Frame = -3

Query: 650 PGMWERTITVGSAGKTFSVTGWKIGWAYGPADLMRNLQVVHQNCVYTCCTPVEEAVARSF 471
           PGMW+RTIT+GSAGKTFSVTGWKIGWAYGPA+L+RNLQ+VHQN VYTC TP++E VARSF
Sbjct: 57  PGMWDRTITLGSAGKTFSVTGWKIGWAYGPAELIRNLQMVHQNSVYTCPTPLQEGVARSF 116

Query: 470 EYELARRDSPDCYFYSLARELRPKRDYLMKILKENGFKPTLPEAGYFVVADWTDLEKKID 291
           E ELAR   P+ YF SL REL+ KRD++ K L E+G +PT+PE GYF++ADW+ L  KID
Sbjct: 117 EVELARLGQPESYFLSLPRELKQKRDFMAKFLSESGMRPTIPEGGYFMLADWSPLAGKID 176

Query: 290 LSSELXXXXXXXXXXXXXKEAGVLAIPPSAFYSEAHKHLGETFARFCFI 144
           LSSE              K  G+  IPPSAFYSE +KHLGE F R+CFI
Sbjct: 177 LSSEPDKHRDYKFTKWMTKNMGLQGIPPSAFYSEPNKHLGEDFVRYCFI 225


>AY094691-1|AAM11044.1|  450|Drosophila melanogaster GH08974p
           protein.
          Length = 450

 Score =  239 bits (586), Expect = 2e-63
 Identities = 109/169 (64%), Positives = 129/169 (76%)
 Frame = -3

Query: 650 PGMWERTITVGSAGKTFSVTGWKIGWAYGPADLMRNLQVVHQNCVYTCCTPVEEAVARSF 471
           PGMW+RTIT+GSAGKTFSVTGWKIGWAYGPA+L+RNLQ+VHQN VYTC TP++E VARSF
Sbjct: 265 PGMWDRTITLGSAGKTFSVTGWKIGWAYGPAELIRNLQMVHQNSVYTCPTPLQEGVARSF 324

Query: 470 EYELARRDSPDCYFYSLARELRPKRDYLMKILKENGFKPTLPEAGYFVVADWTDLEKKID 291
           E ELAR   P+ YF SL REL+ KRD++ K L E+G +PT+PE GYF++ADW+ L  KID
Sbjct: 325 EVELARLGQPESYFLSLPRELKQKRDFMAKFLSESGMRPTIPEGGYFMLADWSPLAGKID 384

Query: 290 LSSELXXXXXXXXXXXXXKEAGVLAIPPSAFYSEAHKHLGETFARFCFI 144
           LSSE              K  G+  IPPSAFYSE +KHLGE F R+CFI
Sbjct: 385 LSSEPDKHRDYKFTKWMTKNMGLQGIPPSAFYSEPNKHLGEDFVRYCFI 433


>AE014297-1394|AAO41545.1|  450|Drosophila melanogaster CG6950-PD,
           isoform D protein.
          Length = 450

 Score =  239 bits (586), Expect = 2e-63
 Identities = 109/169 (64%), Positives = 129/169 (76%)
 Frame = -3

Query: 650 PGMWERTITVGSAGKTFSVTGWKIGWAYGPADLMRNLQVVHQNCVYTCCTPVEEAVARSF 471
           PGMW+RTIT+GSAGKTFSVTGWKIGWAYGPA+L+RNLQ+VHQN VYTC TP++E VARSF
Sbjct: 265 PGMWDRTITLGSAGKTFSVTGWKIGWAYGPAELIRNLQMVHQNSVYTCPTPLQEGVARSF 324

Query: 470 EYELARRDSPDCYFYSLARELRPKRDYLMKILKENGFKPTLPEAGYFVVADWTDLEKKID 291
           E ELAR   P+ YF SL REL+ KRD++ K L E+G +PT+PE GYF++ADW+ L  KID
Sbjct: 325 EVELARLGQPESYFLSLPRELKQKRDFMAKFLSESGMRPTIPEGGYFMLADWSPLAGKID 384

Query: 290 LSSELXXXXXXXXXXXXXKEAGVLAIPPSAFYSEAHKHLGETFARFCFI 144
           LSSE              K  G+  IPPSAFYSE +KHLGE F R+CFI
Sbjct: 385 LSSEPDKHRDYKFTKWMTKNMGLQGIPPSAFYSEPNKHLGEDFVRYCFI 433


>AE014297-1393|AAF54708.2|  450|Drosophila melanogaster CG6950-PC,
           isoform C protein.
          Length = 450

 Score =  239 bits (586), Expect = 2e-63
 Identities = 109/169 (64%), Positives = 129/169 (76%)
 Frame = -3

Query: 650 PGMWERTITVGSAGKTFSVTGWKIGWAYGPADLMRNLQVVHQNCVYTCCTPVEEAVARSF 471
           PGMW+RTIT+GSAGKTFSVTGWKIGWAYGPA+L+RNLQ+VHQN VYTC TP++E VARSF
Sbjct: 265 PGMWDRTITLGSAGKTFSVTGWKIGWAYGPAELIRNLQMVHQNSVYTCPTPLQEGVARSF 324

Query: 470 EYELARRDSPDCYFYSLARELRPKRDYLMKILKENGFKPTLPEAGYFVVADWTDLEKKID 291
           E ELAR   P+ YF SL REL+ KRD++ K L E+G +PT+PE GYF++ADW+ L  KID
Sbjct: 325 EVELARLGQPESYFLSLPRELKQKRDFMAKFLSESGMRPTIPEGGYFMLADWSPLAGKID 384

Query: 290 LSSELXXXXXXXXXXXXXKEAGVLAIPPSAFYSEAHKHLGETFARFCFI 144
           LSSE              K  G+  IPPSAFYSE +KHLGE F R+CFI
Sbjct: 385 LSSEPDKHRDYKFTKWMTKNMGLQGIPPSAFYSEPNKHLGEDFVRYCFI 433


>AE014297-1392|AAF54707.2|  450|Drosophila melanogaster CG6950-PB,
           isoform B protein.
          Length = 450

 Score =  239 bits (586), Expect = 2e-63
 Identities = 109/169 (64%), Positives = 129/169 (76%)
 Frame = -3

Query: 650 PGMWERTITVGSAGKTFSVTGWKIGWAYGPADLMRNLQVVHQNCVYTCCTPVEEAVARSF 471
           PGMW+RTIT+GSAGKTFSVTGWKIGWAYGPA+L+RNLQ+VHQN VYTC TP++E VARSF
Sbjct: 265 PGMWDRTITLGSAGKTFSVTGWKIGWAYGPAELIRNLQMVHQNSVYTCPTPLQEGVARSF 324

Query: 470 EYELARRDSPDCYFYSLARELRPKRDYLMKILKENGFKPTLPEAGYFVVADWTDLEKKID 291
           E ELAR   P+ YF SL REL+ KRD++ K L E+G +PT+PE GYF++ADW+ L  KID
Sbjct: 325 EVELARLGQPESYFLSLPRELKQKRDFMAKFLSESGMRPTIPEGGYFMLADWSPLAGKID 384

Query: 290 LSSELXXXXXXXXXXXXXKEAGVLAIPPSAFYSEAHKHLGETFARFCFI 144
           LSSE              K  G+  IPPSAFYSE +KHLGE F R+CFI
Sbjct: 385 LSSEPDKHRDYKFTKWMTKNMGLQGIPPSAFYSEPNKHLGEDFVRYCFI 433


>AE014297-1391|AAF54709.2|  450|Drosophila melanogaster CG6950-PA,
           isoform A protein.
          Length = 450

 Score =  239 bits (586), Expect = 2e-63
 Identities = 109/169 (64%), Positives = 129/169 (76%)
 Frame = -3

Query: 650 PGMWERTITVGSAGKTFSVTGWKIGWAYGPADLMRNLQVVHQNCVYTCCTPVEEAVARSF 471
           PGMW+RTIT+GSAGKTFSVTGWKIGWAYGPA+L+RNLQ+VHQN VYTC TP++E VARSF
Sbjct: 265 PGMWDRTITLGSAGKTFSVTGWKIGWAYGPAELIRNLQMVHQNSVYTCPTPLQEGVARSF 324

Query: 470 EYELARRDSPDCYFYSLARELRPKRDYLMKILKENGFKPTLPEAGYFVVADWTDLEKKID 291
           E ELAR   P+ YF SL REL+ KRD++ K L E+G +PT+PE GYF++ADW+ L  KID
Sbjct: 325 EVELARLGQPESYFLSLPRELKQKRDFMAKFLSESGMRPTIPEGGYFMLADWSPLAGKID 384

Query: 290 LSSELXXXXXXXXXXXXXKEAGVLAIPPSAFYSEAHKHLGETFARFCFI 144
           LSSE              K  G+  IPPSAFYSE +KHLGE F R+CFI
Sbjct: 385 LSSEPDKHRDYKFTKWMTKNMGLQGIPPSAFYSEPNKHLGEDFVRYCFI 433


>AY113616-1|AAM29621.1|  112|Drosophila melanogaster RH63170p
           protein.
          Length = 112

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
 Frame = -1

Query: 547 GICKW-----YTRTVCTRAAR-RSRKPWPARSSTSWPGATR 443
           G+C+W     +TR   T +AR R+R  WP R  T W    R
Sbjct: 28  GLCRWLWTTGWTRPGWTWSARIRTRWKWPTRIRTGWTRPAR 68



 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -1

Query: 526 RTVCTRAAR--RSRKPWPARSSTSW 458
           RT  TR AR  R+R+ WPAR  T W
Sbjct: 70  RTGWTRPARIRRTRRTWPARIRTRW 94


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,155,185
Number of Sequences: 53049
Number of extensions: 521291
Number of successful extensions: 1693
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1687
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)