Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10f07
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69793-6|CAI46593.1| 424|Caenorhabditis elegans Hypothetical pr... 153 9e-38
Z69793-5|CAA93673.2| 441|Caenorhabditis elegans Hypothetical pr... 153 9e-38
AL031621-5|CAA20930.1| 437|Caenorhabditis elegans Hypothetical ... 127 6e-30
AC006634-3|AAF39795.3| 535|Caenorhabditis elegans Hypothetical ... 29 4.1
Z68006-3|CAA91997.2| 633|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z79754-2|CAB02091.1| 578|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z72503-8|CAJ85752.1| 341|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z72503-7|CAA96597.1| 424|Caenorhabditis elegans Hypothetical pr... 27 9.6
>Z69793-6|CAI46593.1| 424|Caenorhabditis elegans Hypothetical
protein R03A10.4b protein.
Length = 424
Score = 153 bits (372), Expect = 9e-38
Identities = 76/172 (44%), Positives = 107/172 (62%), Gaps = 4/172 (2%)
Frame = -3
Query: 650 PGMWERTITVGSAGKTFSVTGWKIGWAYGPADLMRNLQVVHQNCVYTCCTPVEEAVARSF 471
PGM+ERTI++GSAGK FSVTGWK+GWA GP L+ L+ +HQNCV+TC TP + A+A +F
Sbjct: 234 PGMYERTISIGSAGKAFSVTGWKLGWAVGPKQLLEPLKAIHQNCVFTCSTPTQMAIAEAF 293
Query: 470 EYELAR--RDSPDCYFYS-LARELRPKRDYLMKILKENGFKPTLPEAGYFVVADWTDLEK 300
+ + D + Y + L+ ELR KRD L K+L+E F+P +P+AGYF++AD+ L++
Sbjct: 294 RLDWPKFLSDPENSYLATGLSGELRAKRDKLAKMLEEGNFRPIIPDAGYFMLADYVHLKE 353
Query: 299 KIDLSSELXXXXXXXXXXXXXKEAGVLAIPPSAFYSEAHKHL-GETFARFCF 147
I+L +E +E + IPPSAFYS L R C+
Sbjct: 354 GINLPTE-EDPDDFVFSRWLCREKKLAVIPPSAFYSARDNKLKNSNMVRLCY 404
>Z69793-5|CAA93673.2| 441|Caenorhabditis elegans Hypothetical
protein R03A10.4a protein.
Length = 441
Score = 153 bits (372), Expect = 9e-38
Identities = 76/172 (44%), Positives = 107/172 (62%), Gaps = 4/172 (2%)
Frame = -3
Query: 650 PGMWERTITVGSAGKTFSVTGWKIGWAYGPADLMRNLQVVHQNCVYTCCTPVEEAVARSF 471
PGM+ERTI++GSAGK FSVTGWK+GWA GP L+ L+ +HQNCV+TC TP + A+A +F
Sbjct: 251 PGMYERTISIGSAGKAFSVTGWKLGWAVGPKQLLEPLKAIHQNCVFTCSTPTQMAIAEAF 310
Query: 470 EYELAR--RDSPDCYFYS-LARELRPKRDYLMKILKENGFKPTLPEAGYFVVADWTDLEK 300
+ + D + Y + L+ ELR KRD L K+L+E F+P +P+AGYF++AD+ L++
Sbjct: 311 RLDWPKFLSDPENSYLATGLSGELRAKRDKLAKMLEEGNFRPIIPDAGYFMLADYVHLKE 370
Query: 299 KIDLSSELXXXXXXXXXXXXXKEAGVLAIPPSAFYSEAHKHL-GETFARFCF 147
I+L +E +E + IPPSAFYS L R C+
Sbjct: 371 GINLPTE-EDPDDFVFSRWLCREKKLAVIPPSAFYSARDNKLKNSNMVRLCY 421
>AL031621-5|CAA20930.1| 437|Caenorhabditis elegans Hypothetical
protein F28H6.3 protein.
Length = 437
Score = 127 bits (307), Expect = 6e-30
Identities = 67/173 (38%), Positives = 100/173 (57%), Gaps = 5/173 (2%)
Frame = -3
Query: 650 PGMWERTITVGSAGKTFSVTGWKIGWAYGPADLMRNLQVVHQNCVYTCCTPVEEAVARSF 471
PGM+ERTI++GSAGK SVTGWK+GWA GP L+ L+ + QNCVYTC TP++ A+AR+F
Sbjct: 234 PGMYERTISIGSAGKALSVTGWKLGWAIGPQHLLSPLKTISQNCVYTCPTPIQLAIARAF 293
Query: 470 EYELAR-RDSPDCYFYS--LARELRPKRDYLMKILKENGFKPTLPEAGYFVVADWTDLEK 300
+ + + ++P+ + + L +E+ KR L +L++ F+ LPEAG+F++A+ K
Sbjct: 294 QQDWPKFMENPNQSYLATGLPKEVMQKRKILANMLEKANFQTILPEAGFFMLAECKLPMK 353
Query: 299 KIDLSSELXXXXXXXXXXXXXKEAGVLAIPPSA--FYSEAHKHLGETFARFCF 147
S + LA+ P + F S+ KHL F R CF
Sbjct: 354 SFSFSPIVGKDPLDVQYSKWLCREKKLAVIPFSIFFSSKDQKHLSGRFVRLCF 406
>AC006634-3|AAF39795.3| 535|Caenorhabditis elegans Hypothetical
protein F35F11.1 protein.
Length = 535
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -3
Query: 641 WERTITVGSAGKTFSVTGWKIGWAYGPADLMRNLQVVH 528
W+R I V G + GWK W P D+ ++ H
Sbjct: 442 WDRVIAVFVMGVAWQFKGWK--WNGNPTDIFTHIPAFH 477
>Z68006-3|CAA91997.2| 633|Caenorhabditis elegans Hypothetical
protein K09C8.4 protein.
Length = 633
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 587 WKIGWAYGPADLMRNLQVVHQNCVYTCCTPVEEAV 483
W + Y P + +RN+ + H NC Y T V+ V
Sbjct: 419 WMLDSLY-PINFLRNVAIEHANCKYILMTDVDFVV 452
>Z79754-2|CAB02091.1| 578|Caenorhabditis elegans Hypothetical
protein F25H2.2 protein.
Length = 578
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 164 TSPPGVCVLQSRRRSAVWRVR 226
T PP VC+L+ RR++ + VR
Sbjct: 430 TFPPSVCILRKRRQTVIMVVR 450
>Z72503-8|CAJ85752.1| 341|Caenorhabditis elegans Hypothetical
protein C26C6.4b protein.
Length = 341
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 165 RLPQVFVCFRVEGARRYGEYARLFSEFLCELVIFV 269
R P ++ F G ++GEY R+F ++C FV
Sbjct: 153 RYPDEYMLFDTVGNEQFGEYDRMFG-WICGSTFFV 186
>Z72503-7|CAA96597.1| 424|Caenorhabditis elegans Hypothetical
protein C26C6.4a protein.
Length = 424
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 165 RLPQVFVCFRVEGARRYGEYARLFSEFLCELVIFV 269
R P ++ F G ++GEY R+F ++C FV
Sbjct: 236 RYPDEYMLFDTVGNEQFGEYDRMFG-WICGSTFFV 269
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,375,007
Number of Sequences: 27780
Number of extensions: 270221
Number of successful extensions: 780
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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