Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10f06
         (266 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    57   4e-10
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   3.1  
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    23   7.2  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    23   7.2  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    23   7.2  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    23   7.2  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    23   9.6  
SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   9.6  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 57.2 bits (132), Expect = 4e-10
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = -2

Query: 259 IQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 158
           IQF+ +FIGVNI F PQHFLGL G+PRR  DYP+
Sbjct: 418 IQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPE 451


>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -1

Query: 263 KNSIFYNI--YWSKYNIFSTTFFRFSWNTSTIFRLSRLIY 150
           KNS+  ++  Y++K   +  +F  +    +TIF+ S L+Y
Sbjct: 27  KNSVIPDVIDYYNKGRQYYQSFVVYKATANTIFQFSYLLY 66


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 105 NREIYEPNEEIIFHEIYESG*SEYRRGIPAKPKKCC 212
           N E    +E++I H I+E+G +E       +  K C
Sbjct: 244 NNEFLHDSEKLIDHLIHETGNNELPVASAYEQSKAC 279


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 99  TDNREIYEPNEEII 140
           T NRE+ E NEEI+
Sbjct: 452 TTNREVEEENEEIL 465


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +1

Query: 115 YMNLMKKLYFMKYMSLD 165
           Y +++ KL+F+KY+ L+
Sbjct: 33  YKSVLSKLFFIKYLMLN 49


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 115 YMNLMKKLYFMKYMSLDNLNIVEVFQLNLKNVVEKM 222
           Y   + KL F KY++    +   ++  NL  + EK+
Sbjct: 851 YQEQLDKLNFQKYLNESKCSHSPIYGSNLIRLAEKL 886


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -1

Query: 260 NSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRLSRLIYF 147
           N +  N  WS   ++S++F   ++ T T       I+F
Sbjct: 112 NIVPLNARWSALLLYSSSFMATTFQTHTFTNSIETIFF 149


>SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 103

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 260 NSIFYNIYWSKY 225
           N++  N+YW+KY
Sbjct: 53  NNLLDNVYWNKY 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 905,866
Number of Sequences: 5004
Number of extensions: 13364
Number of successful extensions: 38
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)