Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10f06
         (266 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical ...    29   0.45 
Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z93376-1|CAB07570.3|  472|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U80027-15|AAC48116.2|  194|Caenorhabditis elegans Hypothetical p...    26   4.2  
AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical...    26   4.2  
AL132949-41|CAC35868.2|  472|Caenorhabditis elegans Hypothetical...    26   4.2  
AC024877-7|AAF60907.3|  438|Caenorhabditis elegans Hypothetical ...    25   9.7  

>AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical
           protein C46E10.2 protein.
          Length = 123

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 251 FYNIYWSKYNIFSTTF 204
           F+NIYWS Y IF  TF
Sbjct: 11  FFNIYWSFYAIFGFTF 26


>Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 138 IFHEIYESG*SEYRRGIPAKP 200
           I  E YE G  E RRG+P  P
Sbjct: 449 ICEEFYEQGDDERRRGLPITP 469


>Z93376-1|CAB07570.3|  472|Caenorhabditis elegans Hypothetical
           protein E01F3.1a protein.
          Length = 472

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 138 IFHEIYESG*SEYRRGIPAKP 200
           I  E YE G  E RRG+P  P
Sbjct: 328 ICEEFYEQGDDERRRGLPITP 348


>Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 138 IFHEIYESG*SEYRRGIPAKP 200
           I  E YE G  E RRG+P  P
Sbjct: 449 ICEEFYEQGDDERRRGLPITP 469


>U80027-15|AAC48116.2|  194|Caenorhabditis elegans Hypothetical
           protein T28A11.5 protein.
          Length = 194

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 115 YMNLMKKLYFMKYMSLDNLN 174
           Y+N M K+YF+   S D++N
Sbjct: 49  YVNFMAKMYFLDVKSQDSMN 68


>AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 138 IFHEIYESG*SEYRRGIPAKP 200
           I  E YE G  E RRG+P  P
Sbjct: 449 ICEEFYEQGDDERRRGLPITP 469


>AL132949-41|CAC35868.2|  472|Caenorhabditis elegans Hypothetical
           protein E01F3.1a protein.
          Length = 472

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 138 IFHEIYESG*SEYRRGIPAKP 200
           I  E YE G  E RRG+P  P
Sbjct: 328 ICEEFYEQGDDERRRGLPITP 348


>AC024877-7|AAF60907.3|  438|Caenorhabditis elegans Hypothetical
           protein Y95B8A.11 protein.
          Length = 438

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 124 LMKKLYFMKYMSLDNLNIVEVFQLNLKNVV 213
           ++KK   +++++L N+  V VF+L+  N V
Sbjct: 292 ILKKCVCLRHLTLSNVEDVGVFELDTVNSV 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,761,050
Number of Sequences: 27780
Number of extensions: 69702
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)