Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10f06
         (266 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    20   6.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   6.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           20   6.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          19   8.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      19   8.0  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 171 EYRRGIPAKPKKCCGKNVIFTPIN 242
           ++  GIP   K     +VIF  IN
Sbjct: 134 QFGSGIPMGAKYLMDSDVIFVTIN 157


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 263 KNSIFYNIY 237
           KN+IFY +Y
Sbjct: 26  KNAIFYQVY 34


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 171 EYRRGIPAKPKKCCGKNVIFTPIN 242
           ++  GIP   K     +VIF  IN
Sbjct: 134 QFGSGIPMGAKYLMDSDVIFVTIN 157


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 216 KNVIFTPIN 242
           +N IFTP+N
Sbjct: 93  RNAIFTPLN 101


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 216 KNVIFTPIN 242
           +N IFTP+N
Sbjct: 93  RNAIFTPLN 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,682
Number of Sequences: 438
Number of extensions: 1093
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5012760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)