Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10f05
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 217 8e-58
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.060
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 30 0.24
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 29 0.74
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 28 1.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 1.7
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 27 2.3
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 3.0
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 27 3.0
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 26 3.9
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 3.9
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 26 3.9
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 26 5.2
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 5.2
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 5.2
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 25 6.9
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 9.1
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 25 9.1
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom... 25 9.1
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 217 bits (531), Expect = 8e-58
Identities = 100/171 (58%), Positives = 130/171 (76%)
Frame = -2
Query: 630 RAVAVVVDPIQSVKGKVVIDAFRLINSNMMVLGQEPRQTTSNLGHLQKPSVQALIHGLNR 451
RAVAVVVDPIQSVKGKVVIDAFRLIN + +++GQEPRQTTSNLGH+ KPS+QALIHGL R
Sbjct: 138 RAVAVVVDPIQSVKGKVVIDAFRLINPSTLMMGQEPRQTTSNLGHINKPSIQALIHGLGR 197
Query: 450 HYYSISINYRKNELEQKMLLNLHKKSWMDGLTLSDYKEHCSVNESTVTDMLELAKNYNKA 271
HYYS+ INY+K ELE+ MLLNLHK+ W GL L ++ N +++ M L++ Y +
Sbjct: 198 HYYSLRINYKKTELEEIMLLNLHKQPWAHGLLLENFNSAAEKNHASIDKMKSLSEQYTER 257
Query: 270 LEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDVLMANNIVQCLGAMLDTLVF 118
+++E ++PEQL I+ VGKQDPK+HL+ +V + NNI L MLD++ F
Sbjct: 258 VQNEVTLSPEQLRIQYVGKQDPKKHLDAEVQKCIDNNISSMLACMLDSVAF 308
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 32.3 bits (70), Expect = 0.060
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = -2
Query: 318 STVTDMLELAKNYNKALEDEEKMTPEQLA--IKNVGKQDPKRHLEEKVDVLMANNIVQCL 145
+T T + +Y L++ ++ P+Q A + +P +LE+ VD+ M+ N+VQ
Sbjct: 500 ATYTSQQNITPDYVSLLQNLVRVNPDQAAEFATQMFNSNPSINLEKIVDIFMSQNLVQQA 559
Query: 144 GA-MLDTL 124
A +LD L
Sbjct: 560 TAFLLDAL 567
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 30.3 bits (65), Expect = 0.24
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = -2
Query: 624 VAVVVDPIQSVKGKVV-IDAFRLIN-SNMMVLGQEPRQTTSNLGHLQKPSVQALIHGLNR 451
VAVV+DP +S++ V I AFR N + + R S L PS + G +
Sbjct: 146 VAVVLDPKRSLESPYVNIGAFRTYPVGNDGSIRTKSRHHPSVL-FKNLPSSKIEDAGAHA 204
Query: 450 H-YYSISINYRKNELEQKMLLNLHKKSWMDGLT 355
YYS+ I Y ++ E+K+ L ++W +T
Sbjct: 205 EAYYSLPITYFHSKAEKKVTEFLRNRNWSRSIT 237
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 28.7 bits (61), Expect = 0.74
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = -2
Query: 360 LTLSDYKEHCSVNESTVTDMLELAKNYNKALEDEEKM-----TPEQLAIKNVGK 214
+ L DY E S + ++ EL + N D EKM TP+ + +K+ GK
Sbjct: 42 MKLGDYTEETSFVDDSIFKREELTPDRNSPANDVEKMEVPKPTPQWMKLKDEGK 95
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 533 PSTIIFELIRRNASITTLPFTDWMGSTTTATARS 634
P+TII E +RR +I + T W S + +RS
Sbjct: 294 PTTIIAEELRRKRNIQEMSETSWKPSIAESASRS 327
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = -2
Query: 315 TVTDMLELAKNYNKALEDEEKMTPE---QLAIKNVGKQDPKRHLEEKVDVLMA 166
T ++ E YN A+ + + + + L+ NVG +DP + L++++D L A
Sbjct: 541 TAEEIAEYKTKYNGAMLENKHLKEQVESMLSQLNVGPRDPMQFLKKQLDELKA 593
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = -2
Query: 459 LNRHYYSISINYRKNELEQKMLLNL--HKKSWMDGLTLSDYKEHCSVNESTVTDMLELAK 286
LNR + S Y N++EQK+L+ + S+ +Y + S+N + ++ M E K
Sbjct: 4 LNRLAKTFSPYYGLNKVEQKLLIKIDWFILSYCCVSYFINYLDRSSINNAYLSGMQEDLK 63
Query: 285 NYNKALED 262
+ L+D
Sbjct: 64 MHGNELQD 71
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = -2
Query: 441 SISINYRKNELEQKMLLNLHKKSWMDGLTLSDYKEHCSVNESTVTDMLELAKNYNKALED 262
SIS + K+ + L NL + LS+YKE ++ ST+ + +L+K+ +
Sbjct: 816 SISFSQNKSAARHEELKNLSTLKSLAKEFLSNYKEE-NLENSTLVQLKQLSKHLLSETKQ 874
Query: 261 EEKMT 247
+E +
Sbjct: 875 DESFS 879
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/68 (23%), Positives = 35/68 (51%)
Frame = -2
Query: 264 DEEKMTPEQLAIKNVGKQDPKRHLEEKVDVLMANNIVQCLGAMLDTLVFK*FLM*QTVYT 85
+E ++ P+ + K+ PK+ + D L N++ + L +++D L K F YT
Sbjct: 512 NEVEVDPQVFKNLKIFKRPPKKEGDLIFDRLSTNSLNKYLTSLMDGLSAKVFRTYNASYT 571
Query: 84 ISLKITRM 61
++ ++ +M
Sbjct: 572 MAEELKKM 579
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 26.2 bits (55), Expect = 3.9
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 463 MYKSLYRWFLEVPEI*GGLSGLLSKYHHI*VDKAE 567
MY SLYR+F+E+ EI G + LS+ +D AE
Sbjct: 540 MY-SLYRFFVEMKEINGEFADKLSRVALDCIDAAE 573
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 77 RLIVYTVCHIKNHLNTKVSSIAPRHWTMLLAMSTSTFSSKCLLGSCL 217
R ++ V ++ NH+ T S+ R T + + + FSSK L+ +C+
Sbjct: 1218 REVIRLVSNLSNHVLTNESA---RQLTKIRSKNAKVFSSKRLVKACM 1261
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 26.2 bits (55), Expect = 3.9
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Frame = -2
Query: 420 KNELEQKMLLNLHKKSWMDGLTLSDYKEHCSVNESTVTDMLELAKNYNKALED-----EE 256
KN +K + + +S D +D CS +S +T + NK+L+D +E
Sbjct: 186 KNRKGKKEISDSEPESDHDSCVSTDTVASCSTEQSLITSNTSKHRRPNKSLKDLLGIQKE 245
Query: 255 KMTPEQLAI 229
K P +A+
Sbjct: 246 KPPPPPVAV 254
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 294 LAKNYNKALEDEEKMTPEQLAIKN 223
LAK N LEDE K TP + N
Sbjct: 418 LAKQQNALLEDEGKPTPSHTLLHN 441
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.8 bits (54), Expect = 5.2
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -2
Query: 357 TLSDYKEHCSVNESTVTDMLELAKNYNKALEDEEKMTPEQLAIKNVGKQDPKRHLEEKVD 178
T DY++ + + + +L ++Y KALE E + E +A+K + + EK D
Sbjct: 1058 TREDYEKELLRHADARSTLQKLREDYTKALEQVEDLNKE-IALKAGINESQPFPISEKED 1116
Query: 177 VL 172
L
Sbjct: 1117 PL 1118
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -2
Query: 411 LEQKMLLNLHKKSWMDGLTLSDYKEHCSVNESTVTDMLELAKNYNKALEDEE 256
L K ++ M+ +LS Y E+ N+S+V D+L+ + Y + + D E
Sbjct: 894 LSTKQFEKKYRIDLMEDRSLSLYMENSIENDSSVQDLLD--EEYTQLVADRE 943
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = -2
Query: 351 SDYKEHCSVNESTVTDMLELAKNYNKALEDEEKMTPEQLAIKNVGK 214
S+ K + ST++++L+ K+Y+ + + +T + NVGK
Sbjct: 237 SNLKHQSASASSTISNLLKSLKSYSAKKKLKSSLTVGVIGYPNVGK 282
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -2
Query: 423 RKNELEQKMLLNLHKKSWMD 364
R + K+LLN+++KSW++
Sbjct: 1437 RVQSINPKILLNIYEKSWLN 1456
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 1 FSKIVQLFLHYKTMRRVKDNHPSYFKTYCIYCLSHQKSFEYQSVKHS 141
+SK+ L L YK N FK + L+H Y+ VKH+
Sbjct: 372 YSKLEHLDLQYKLQGSTLHN----FKVESLKMLNHPDKKSYKGVKHT 414
>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 304
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -2
Query: 408 EQKMLLNLHKKSWMDGLTLSDYKEHCSVNESTVTDMLELAKNYNKALED 262
++ L NL K + + +KE CS N +D + +Y++ L+D
Sbjct: 222 DEMWLANLLKANDEIVTAIDAFKEKCSENSDYSSDSGSYSSSYSRHLDD 270
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,407
Number of Sequences: 5004
Number of extensions: 53114
Number of successful extensions: 182
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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