Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10f05
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916... 266 1e-71
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270... 265 2e-71
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 58 8e-09
04_04_1418 + 33428527-33428895,33429206-33429280,33429697-334299... 40 0.002
02_04_0567 - 23914330-23914461,23915016-23915136,23915954-239160... 30 1.8
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 29 3.1
04_01_0392 + 5149981-5150014,5150124-5150188,5150572-5150868 29 4.1
06_02_0315 - 14230234-14232771 28 5.4
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 28 5.4
01_03_0043 - 11919597-11920364 28 7.1
>01_01_1151 +
9165454-9165580,9165658-9165835,9167256-9167337,
9167907-9168083,9168174-9168341,9168466-9168657
Length = 307
Score = 266 bits (651), Expect = 1e-71
Identities = 124/171 (72%), Positives = 144/171 (84%)
Frame = -2
Query: 630 RAVAVVVDPIQSVKGKVVIDAFRLINSNMMVLGQEPRQTTSNLGHLQKPSVQALIHGLNR 451
RAVAVV+DPIQSVKGKVVIDAFRLIN M+LGQEPRQTTSN+GHL KPS+QALIHGLNR
Sbjct: 137 RAVAVVIDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNR 196
Query: 450 HYYSISINYRKNELEQKMLLNLHKKSWMDGLTLSDYKEHCSVNESTVTDMLELAKNYNKA 271
HYYSI+INYRKNELE+KMLLNLHKK W DGL L + H NE TV +ML LA YNKA
Sbjct: 197 HYYSIAINYRKNELEEKMLLNLHKKKWTDGLILKSFDTHSKTNEQTVQEMLNLAIKYNKA 256
Query: 270 LEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDVLMANNIVQCLGAMLDTLVF 118
+++E+++ PE+LAI NVG+QD K+HLEE V LM++NIVQ LG MLDT+VF
Sbjct: 257 VQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF 307
>05_04_0078 +
17725931-17726057,17726128-17726305,17726942-17727023,
17728500-17728676,17728763-17728930,17729028-17729219
Length = 307
Score = 265 bits (649), Expect = 2e-71
Identities = 124/171 (72%), Positives = 144/171 (84%)
Frame = -2
Query: 630 RAVAVVVDPIQSVKGKVVIDAFRLINSNMMVLGQEPRQTTSNLGHLQKPSVQALIHGLNR 451
RAVAVV+DPIQSVKGKVVIDAFRLIN M+LGQEPRQTTSN+GHL KPS+QALIHGLNR
Sbjct: 137 RAVAVVIDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNR 196
Query: 450 HYYSISINYRKNELEQKMLLNLHKKSWMDGLTLSDYKEHCSVNESTVTDMLELAKNYNKA 271
HYYSI+INYRKNELE+KMLLNLHKK W DGL L + H NE TV +ML LA YNKA
Sbjct: 197 HYYSIAINYRKNELEEKMLLNLHKKKWTDGLILKRFDTHSKTNEQTVQEMLNLAIKYNKA 256
Query: 270 LEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDVLMANNIVQCLGAMLDTLVF 118
+++E+++ PE+LAI NVG+QD K+HLEE V LM++NIVQ LG MLDT+VF
Sbjct: 257 VQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF 307
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 57.6 bits (133), Expect = 8e-09
Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 8/174 (4%)
Frame = -2
Query: 630 RAVAVVVDPIQSVKGKVVIDAFRLINS---NMMVLGQEPRQTTSNLGHLQKP--SVQALI 466
RA+ V VDP++S G ++AFR + S +G R+ S + +KP +
Sbjct: 196 RAILVAVDPVKSATGNFTMNAFRSVTSYHETSSNVGALNREYYS-VAEDEKPFFELDIFA 254
Query: 465 HGLNRHYYSISINYRKNELEQKMLLNLHKKSWMDGLTLSDYKEHCS---VNESTVTDMLE 295
GL +YSI I++RKN+LE +L ++ K G + D + C ++ES ++ E
Sbjct: 255 QGLASVFYSILISHRKNDLEINILKSMDKMG-SKGSSSEDCRSLCQFPVMSESEKKNVEE 313
Query: 294 LAKNYNKALEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDVLMANNIVQCLGAML 133
+ + ++EE+M E A +N D + HLEE + LM+ I+Q G ML
Sbjct: 314 MLIDLLTKYQNEEEM-QESDAPEN--PPDAENHLEE-LKNLMSACILQIFGMML 363
>04_04_1418 +
33428527-33428895,33429206-33429280,33429697-33429978,
33430058-33430205,33430309-33430388,33431238-33431318,
33431416-33431514
Length = 377
Score = 39.5 bits (88), Expect = 0.002
Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 11/174 (6%)
Frame = -2
Query: 633 ERAVAVVVDPIQSVK-GKVVIDAFRLINSNMMVLGQEPRQTTSNLGHLQKPSVQALIHGL 457
E +AVV+DP ++V GKV I AFR + + P + S + ++ G+
Sbjct: 185 EPFLAVVIDPTRTVSAGKVEIGAFRTYPKDY----KPPDEPVSEYQTIPLNKIEDF--GV 238
Query: 456 N-RHYYSISINYRKNELEQKMLLNLHKKSWMDGLTLSDY---KEHCSVNESTVTDMLELA 289
+ + YY++ I Y K+ L+ +L L K W++ L+ S +++ + + D LE A
Sbjct: 239 HCKQYYALDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNRDYVAGQIFDLADKLEQA 298
Query: 288 K------NYNKALEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDVLMANNIVQCL 145
+ Y + + K E+ + V +D + E+V LM+ I L
Sbjct: 299 EGQLAHSRYGMLMPSQRKKEQEESPLAKV-TRDSSKITAEQVHGLMSQVIKDIL 351
>02_04_0567 -
23914330-23914461,23915016-23915136,23915954-23916048,
23916131-23916301,23917291-23917380,23917636-23918139
Length = 370
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = -2
Query: 438 ISINYRKNELEQKM--LLNLHKKSWMDGLTLSDYKEH 334
+S+ R+NE ++KM L + K +++DG+ + Y E+
Sbjct: 210 VSVEERRNEADEKMLSLYGIAKSNFLDGILTAQYSEN 246
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 541 GTWTRAQTNHLKSRAPPETICTSSYTWIKSSLLF 440
G +TRA ++++ + SSY W++ SL+F
Sbjct: 136 GFYTRASNEYVRASGWDARLVNSSYRWVERSLVF 169
>04_01_0392 + 5149981-5150014,5150124-5150188,5150572-5150868
Length = 131
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = -2
Query: 306 DMLELAKNYNKALEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDVLMANNI 157
+ +++ KN + AL D K+ + + K P+ ++DV+M NN+
Sbjct: 42 ECIKILKNCHYALSDNGKVIVVDIVLPETPKPVPEAQNPLRMDVMMLNNL 91
>06_02_0315 - 14230234-14232771
Length = 845
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 330 SVNESTVTDMLELAKNYNKALEDEEKMTPEQLAI 229
+V S D+ E A Y EDEEK+ PE+ I
Sbjct: 421 AVETSECGDLGEEASEYGDCREDEEKIEPEEAPI 454
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 80 LIVYTVCHIKNHLNTKVSSIAPRHWTMLLAMSTST 184
L+ T +IK+H K+S I HWT L T+T
Sbjct: 2288 LMKNTSNNIKHHRRWKISRIKAVHWTRYLLQYTAT 2322
>01_03_0043 - 11919597-11920364
Length = 255
Score = 27.9 bits (59), Expect = 7.1
Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 8/134 (5%)
Frame = -2
Query: 519 QTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKK-----SWMDGLT 355
+T S L H + ++ + + +NY E+ QKML L +K + +
Sbjct: 118 ETFSMLPHESVNDMYGRLNVIVNDLKGLGVNYTDLEIAQKMLRALPEKYETLVTMLINSD 177
Query: 354 LSDYKEHCSVNESTVTDMLELAKNYNKALEDEEKMTPEQLAIKNVGK---QDPKRHLEEK 184
+S K + + DM +L K +K Q +++ GK + LEE+
Sbjct: 178 MSRMKPASLLGKINTNDMYKLKKKEMDEASPSKKCIALQAEVEDKGKGKVNEVNEDLEEE 237
Query: 183 VDVLMANNIVQCLG 142
+ L+A LG
Sbjct: 238 I-ALLARRFNDLLG 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,465,698
Number of Sequences: 37544
Number of extensions: 319050
Number of successful extensions: 737
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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