Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10f05
(634 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome re... 236 8e-63
U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical pr... 132 2e-31
U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signaloso... 40 0.002
U80437-5|AAV58881.1| 527|Caenorhabditis elegans Neurabin protei... 33 0.13
U80437-3|AAK68243.1| 561|Caenorhabditis elegans Neurabin protei... 33 0.13
U80437-2|AAL16317.1| 658|Caenorhabditis elegans Neurabin protei... 33 0.13
U80437-1|AAB37620.1| 721|Caenorhabditis elegans Neurabin protei... 33 0.13
Z74041-5|CAA98516.2| 354|Caenorhabditis elegans Hypothetical pr... 32 0.39
Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical pr... 29 2.1
AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein. 29 2.1
AF047657-8|AAK18944.1| 328|Caenorhabditis elegans Hypothetical ... 29 2.1
Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr... 28 6.4
U37429-13|AAA79343.1| 303|Caenorhabditis elegans Hypothetical p... 28 6.4
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical... 28 6.4
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 28 6.4
Z81037-1|CAB02745.1| 819|Caenorhabditis elegans Hypothetical pr... 27 8.4
AL023844-1|CAA19526.1| 401|Caenorhabditis elegans Hypothetical ... 27 8.4
AF067947-3|AAC19231.1| 451|Caenorhabditis elegans Hypothetical ... 27 8.4
>AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 11 protein.
Length = 312
Score = 236 bits (578), Expect = 8e-63
Identities = 113/169 (66%), Positives = 136/169 (80%)
Frame = -2
Query: 633 ERAVAVVVDPIQSVKGKVVIDAFRLINSNMMVLGQEPRQTTSNLGHLQKPSVQALIHGLN 454
+RAVAVVVDPIQSVKGKVVIDAFR IN M L QEPRQTTSNLGHLQKPS+QALIHGLN
Sbjct: 140 DRAVAVVVDPIQSVKGKVVIDAFRTINPQSMALNQEPRQTTSNLGHLQKPSIQALIHGLN 199
Query: 453 RHYYSISINYRKNELEQKMLLNLHKKSWMDGLTLSDYKEHCSVNESTVTDMLELAKNYNK 274
RHYYSI I YR ++LEQKMLLNL+K SWMD +++ +Y + N+ + ML+LAKNY K
Sbjct: 200 RHYYSIPIAYRTHDLEQKMLLNLNKLSWMDAVSVENYSKCGEQNKEHLKAMLKLAKNYKK 259
Query: 273 ALEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDVLMANNIVQCLGAMLDT 127
ALEDE+ MT ++LAIKNVGK DPKRH+ ++V ++ +NIVQ L M+ T
Sbjct: 260 ALEDEKNMTDQELAIKNVGKMDPKRHIADEVSKMLNDNIVQSLAGMMAT 308
>U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical
protein F37A4.5 protein.
Length = 319
Score = 132 bits (320), Expect = 2e-31
Identities = 76/178 (42%), Positives = 108/178 (60%), Gaps = 11/178 (6%)
Frame = -2
Query: 630 RAVAVVVDPIQSVKGKVVIDAFRLINS-NMMVLG----QEPRQTTSNLGHLQKPSVQALI 466
RAVAVVVDPIQSVKGKV++DAFR +N N+ + EPRQTTSNLGHL KPS+ +++
Sbjct: 137 RAVAVVVDPIQSVKGKVMLDAFRSVNPLNLQIRPLAPTAEPRQTTSNLGHLTKPSLISVV 196
Query: 465 HGLNRHYYSISINYRKNELEQKMLLNLHKKSWMDGLTLSDYKEHCSVNESTVTDMLELAK 286
HGL YYS+++ YR EQKML+ L+KKSW D L +S Y E E + +L
Sbjct: 197 HGLGTKYYSLNVAYRMGSNEQKMLMCLNKKSWYDQLNMSTYSELEKKQEEKFKSINKLIA 256
Query: 285 NYNKALED------EEKMTPEQLAIKNVGKQDPKRHLEEKVDVLMANNIVQCLGAMLD 130
+NK +++ +K Q +K GK + K+ L+ L+ +++ L AM++
Sbjct: 257 VFNKDIDEVKEKPIADKKGKTQEEVKKFGKINAKQQLQMITSSLLNDSLCHQLTAMIN 314
>U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signalosome
subunit protein 5 protein.
Length = 368
Score = 39.5 bits (88), Expect = 0.002
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Frame = -2
Query: 624 VAVVVDPIQSVK-GKVVIDAFRLINSNMMVLGQEPRQTTS-NLGHLQKPSVQALIHGLNR 451
VA+V+DP++++ GKV I AFR P + S L ++ V +
Sbjct: 167 VAIVIDPLRTMSAGKVDIGAFRTYPEGYRPPDDVPSEYQSIPLAKIEDFGVHC------K 220
Query: 450 HYYSISINYRKNELEQKMLLNLHKKSWMDGLTLSDYKEHCSVNESTVTDMLELAKNYNKA 271
YYS+ +++ K++L+ +L +L W+ L+ S + + + D+ + +K
Sbjct: 221 RYYSLDVSFFKSQLDAHILTSLWNSYWISTLSSSPLFSNVEFLNNQIQDINQKLSAVDKK 280
Query: 270 LEDEEKMTPEQLAIKNV 220
L+ ++ A+ V
Sbjct: 281 LQLNDRSVDGHEALMKV 297
>U80437-5|AAV58881.1| 527|Caenorhabditis elegans Neurabin protein
1, isoform e protein.
Length = 527
Score = 33.5 bits (73), Expect = 0.13
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = -2
Query: 384 HKKSWMDGLTLSDYKEHCSVNESTVTDMLELAKNY---NKALEDEEKMTPEQLAIKNVGK 214
HKK+ LS K HC E + KNY K L + E+ EQL K+V
Sbjct: 233 HKKAEQYHEVLSSTKSHCDQLEKQNEQANYMIKNYQEREKELLNREENHVEQLRDKDVHY 292
Query: 213 QDPKRHLEEKVDVL 172
R L+E++D L
Sbjct: 293 ASLVRQLKERIDEL 306
>U80437-3|AAK68243.1| 561|Caenorhabditis elegans Neurabin protein
1, isoform b protein.
Length = 561
Score = 33.5 bits (73), Expect = 0.13
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = -2
Query: 384 HKKSWMDGLTLSDYKEHCSVNESTVTDMLELAKNY---NKALEDEEKMTPEQLAIKNVGK 214
HKK+ LS K HC E + KNY K L + E+ EQL K+V
Sbjct: 267 HKKAEQYHEVLSSTKSHCDQLEKQNEQANYMIKNYQEREKELLNREENHVEQLRDKDVHY 326
Query: 213 QDPKRHLEEKVDVL 172
R L+E++D L
Sbjct: 327 ASLVRQLKERIDEL 340
>U80437-2|AAL16317.1| 658|Caenorhabditis elegans Neurabin protein
1, isoform d protein.
Length = 658
Score = 33.5 bits (73), Expect = 0.13
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = -2
Query: 384 HKKSWMDGLTLSDYKEHCSVNESTVTDMLELAKNY---NKALEDEEKMTPEQLAIKNVGK 214
HKK+ LS K HC E + KNY K L + E+ EQL K+V
Sbjct: 364 HKKAEQYHEVLSSTKSHCDQLEKQNEQANYMIKNYQEREKELLNREENHVEQLRDKDVHY 423
Query: 213 QDPKRHLEEKVDVL 172
R L+E++D L
Sbjct: 424 ASLVRQLKERIDEL 437
>U80437-1|AAB37620.1| 721|Caenorhabditis elegans Neurabin protein
1, isoform a protein.
Length = 721
Score = 33.5 bits (73), Expect = 0.13
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = -2
Query: 384 HKKSWMDGLTLSDYKEHCSVNESTVTDMLELAKNY---NKALEDEEKMTPEQLAIKNVGK 214
HKK+ LS K HC E + KNY K L + E+ EQL K+V
Sbjct: 427 HKKAEQYHEVLSSTKSHCDQLEKQNEQANYMIKNYQEREKELLNREENHVEQLRDKDVHY 486
Query: 213 QDPKRHLEEKVDVL 172
R L+E++D L
Sbjct: 487 ASLVRQLKERIDEL 500
>Z74041-5|CAA98516.2| 354|Caenorhabditis elegans Hypothetical
protein T03F7.2 protein.
Length = 354
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 131 SSIAPRHWTMLLAMSTSTFSSKCLLGSCLPTFLMANCSG 247
+ + P W ML +TFSS CL G +P + C+G
Sbjct: 62 NEMLPIKWCMLYLHLLATFSSLCLTGVMMPYVFIPACAG 100
>Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical protein
C10C5.6b protein.
Length = 1782
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -2
Query: 267 EDEEKMTPEQLA--IKNVGKQDPKRHLEEK 184
EDE++ PEQ IK++ KQD K H E++
Sbjct: 1286 EDEDEFMPEQFREKIKDIQKQDRKMHEEKR 1315
>Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical protein
C10C5.6a protein.
Length = 1776
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -2
Query: 267 EDEEKMTPEQLA--IKNVGKQDPKRHLEEK 184
EDE++ PEQ IK++ KQD K H E++
Sbjct: 1280 EDEDEFMPEQFREKIKDIQKQDRKMHEEKR 1309
>Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical protein
C10C5.6b protein.
Length = 1782
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -2
Query: 267 EDEEKMTPEQLA--IKNVGKQDPKRHLEEK 184
EDE++ PEQ IK++ KQD K H E++
Sbjct: 1286 EDEDEFMPEQFREKIKDIQKQDRKMHEEKR 1315
>Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical protein
C10C5.6a protein.
Length = 1776
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -2
Query: 267 EDEEKMTPEQLA--IKNVGKQDPKRHLEEK 184
EDE++ PEQ IK++ KQD K H E++
Sbjct: 1280 EDEDEFMPEQFREKIKDIQKQDRKMHEEKR 1309
>AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein.
Length = 1800
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -2
Query: 267 EDEEKMTPEQLA--IKNVGKQDPKRHLEEK 184
EDE++ PEQ IK++ KQD K H E++
Sbjct: 1304 EDEDEFMPEQFREKIKDIQKQDRKMHEEKR 1333
>AF047657-8|AAK18944.1| 328|Caenorhabditis elegans Hypothetical
protein F37B4.10 protein.
Length = 328
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 7 KIVQLFL-HYKTMRRVKDNHPSYFKTYCIYCLSHQKSFEYQSVKHS 141
+I+ FL K M+++ P + YCI CL +QKSF + KH+
Sbjct: 238 EIIDEFLDRLKPMKQLGFVRP-HKPVYCIVCLKYQKSFHTCNWKHT 282
>Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical
protein F46F6.2 protein.
Length = 1012
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -2
Query: 321 ESTVTDMLELAKNYNKALEDEEKMTPEQLAIKNVGKQDPKRHLEEK 184
E+ +M+ELA YN + + + E L +++V ++D + L+ K
Sbjct: 45 ETAPAEMVELADKYNFTINEGSSIQQEALELRSVIRKDLTKKLKIK 90
>Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical
protein F46F6.2 protein.
Length = 1012
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -2
Query: 321 ESTVTDMLELAKNYNKALEDEEKMTPEQLAIKNVGKQDPKRHLEEK 184
E+ +M+ELA YN + + + E L +++V ++D + L+ K
Sbjct: 45 ETAPAEMVELADKYNFTINEGSSIQQEALELRSVIRKDLTKKLKIK 90
>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical
protein C09F9.2 protein.
Length = 1642
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 473 ACTDGFWRCPRFEVVCLGSCPSTIIFELIRRNASITTLP 589
AC G+ R P+ + V G CP+ + ++ A T +P
Sbjct: 529 ACLQGYARNPQGQCVYWGDCPTDVQPTTLKSTAPTTPVP 567
>U37429-13|AAA79343.1| 303|Caenorhabditis elegans Hypothetical
protein F09E5.3 protein.
Length = 303
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = -2
Query: 408 EQKMLLNLHKKSWMDGLTLSDYKEHCSVNESTVTDMLELAKNYNKALEDEEKMTPEQLAI 229
E K L N+++ SW L SD+ + S + +V LE+A A++ ++T +++
Sbjct: 197 ELKTLSNVYRASWASILAGSDFIK-TSTGKESVNATLEVAYVMCTAIKRWHELTGKKVGF 255
Query: 228 KNVG 217
K G
Sbjct: 256 KPAG 259
>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
protein Y66D12A.14 protein.
Length = 2870
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -2
Query: 345 YKEHCS-VNESTVTDMLELAKNYNKALEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDVLM 169
Y ++C+ EST + LE K Y + EE++ + + + P+R ++ K D +
Sbjct: 504 YHDYCARAEESTSPEDLEYWKRYLELFSSEERLPASSICASYLYRTFPER-IQNKFDGIS 562
Query: 168 ANNIVQCLGAMLDTLVF 118
+ + TL F
Sbjct: 563 REHSFSRFELFMGTLEF 579
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -2
Query: 378 KSWMDGLTLSDYKEHCSVNESTVTDMLELAKNYNKALEDEEKMTPEQLAIKNVGKQDPKR 199
K W + L + Y+E+ E+T T A + +E TPEQ +NV K+ P
Sbjct: 242 KEWEEKLATA-YEEYKKKQETTATQNANSAPLLRNLVMEETPKTPEQEKEQNV-KEKPAE 299
Query: 198 HLE 190
E
Sbjct: 300 STE 302
>Z81037-1|CAB02745.1| 819|Caenorhabditis elegans Hypothetical
protein C17E4.2 protein.
Length = 819
Score = 27.5 bits (58), Expect = 8.4
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Frame = -2
Query: 420 KNELEQKML-LNLHKKSWMDGLTLSDYKEHCSVNEST--VTDMLELAK-NYNKALEDEEK 253
K+ LEQK L L K+ +TL E V E T + + A NK +++ +
Sbjct: 631 KSHLEQKYKRLTLKMKNLEAAMTLKLELESLKVFEETKKIQENHRAANAQINKLVDENSQ 690
Query: 252 MTP--EQLAIKNVGKQDPKRHLEEKVDVLMANNI 157
+ EQ+ KN+ + L EK+ L NI
Sbjct: 691 IVHKLEQIVAKNINLEKKSAELNEKMSALNKINI 724
>AL023844-1|CAA19526.1| 401|Caenorhabditis elegans Hypothetical
protein Y48A6B.1 protein.
Length = 401
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/60 (21%), Positives = 32/60 (53%)
Frame = +2
Query: 53 KITILVILRLIVYTVCHIKNHLNTKVSSIAPRHWTMLLAMSTSTFSSKCLLGSCLPTFLM 232
+ T+++I+ L+V+ + L + +S+I P H ++ ++ L +CL +F++
Sbjct: 301 RTTLMLIIMLVVFLCTEMPQGLLSILSAIYPTHVHTMIYVNVGEVLDLMSLINCLTSFIV 360
>AF067947-3|AAC19231.1| 451|Caenorhabditis elegans Hypothetical
protein T10B5.8 protein.
Length = 451
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 366 DGLTLSDYKEHCSVNESTVTDMLELA 289
+GLTL D K C V ES D +EL+
Sbjct: 259 EGLTLEDAKTMCQVYESKGFDFVELS 284
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,528,890
Number of Sequences: 27780
Number of extensions: 297371
Number of successful extensions: 964
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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