Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10f05
(634 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ435337-1|ABD92652.1| 135|Apis mellifera OBP20 protein. 23 2.5
DQ435336-1|ABD92651.1| 135|Apis mellifera OBP19 protein. 23 2.5
DQ494417-1|ABF55368.1| 42|Apis mellifera telomerase reverse tr... 22 5.7
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 22 5.7
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 5.7
AF393494-1|AAL60419.1| 144|Apis mellifera odorant binding prote... 21 7.5
AF166496-1|AAD51944.1| 144|Apis mellifera pheromone-binding pro... 21 7.5
AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter... 21 7.5
DQ435334-1|ABD92649.1| 135|Apis mellifera OBP17 protein. 21 9.9
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 9.9
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 9.9
>DQ435337-1|ABD92652.1| 135|Apis mellifera OBP20 protein.
Length = 135
Score = 23.0 bits (47), Expect = 2.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 1 FSKIVQLFLHYKTMRRV 51
F+K+V+ F YKTM+ V
Sbjct: 116 FNKLVKCFGKYKTMKEV 132
>DQ435336-1|ABD92651.1| 135|Apis mellifera OBP19 protein.
Length = 135
Score = 23.0 bits (47), Expect = 2.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 1 FSKIVQLFLHYKTMRRV 51
F+K+V+ F YKTM+ V
Sbjct: 116 FNKLVKCFGKYKTMKEV 132
>DQ494417-1|ABF55368.1| 42|Apis mellifera telomerase reverse
transcriptase protein.
Length = 42
Score = 21.8 bits (44), Expect = 5.7
Identities = 6/19 (31%), Positives = 14/19 (73%)
Frame = +1
Query: 37 TMRRVKDNHPSYFKTYCIY 93
T++ +K + +YF+ YC++
Sbjct: 6 TLQSLKKDFGTYFQQYCLH 24
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.8 bits (44), Expect = 5.7
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Frame = -2
Query: 483 SVQALIHGLNRHYYSISINYRKNELEQKMLLNLHK--KSWMDGL--TLSDYKEHCSVNES 316
+V I+ + H + +N +K+ E K +S G T S Y S +
Sbjct: 181 NVLTKINKIEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSHYSRERSCSRD 240
Query: 315 TVTDMLELAKNYNKALEDEEKMTPEQLAIKNVGK 214
+ E + Y K ++EK+ E+ + K +
Sbjct: 241 RNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSR 274
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.8 bits (44), Expect = 5.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 526 AQTNHLKSRAPPETICTSSYT 464
AQ H +AP ETI +S +T
Sbjct: 291 AQPVHSAYKAPEETIISSVFT 311
>AF393494-1|AAL60419.1| 144|Apis mellifera odorant binding protein
ASP1 protein.
Length = 144
Score = 21.4 bits (43), Expect = 7.5
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +2
Query: 191 SKCLLGSCLPTFLMANCSGV 250
++ ++G CLPT NC+ +
Sbjct: 107 AQSVMGKCLPTSGSDNCNKI 126
>AF166496-1|AAD51944.1| 144|Apis mellifera pheromone-binding
protein ASP1 protein.
Length = 144
Score = 21.4 bits (43), Expect = 7.5
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +2
Query: 191 SKCLLGSCLPTFLMANCSGV 250
++ ++G CLPT NC+ +
Sbjct: 107 AQSVMGKCLPTSGSDNCNKI 126
>AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter
Am-EAAT protein.
Length = 543
Score = 21.4 bits (43), Expect = 7.5
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -2
Query: 591 KGKVVIDAFRLINSNMMVL 535
+GK+++D F ++N +M L
Sbjct: 260 QGKLIVDFFMILNEIIMKL 278
>DQ435334-1|ABD92649.1| 135|Apis mellifera OBP17 protein.
Length = 135
Score = 21.0 bits (42), Expect = 9.9
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +1
Query: 4 SKIVQLFLHYKTMRRV 51
SKI++ F YKT+ ++
Sbjct: 117 SKILECFFKYKTINQI 132
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 9.9
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -2
Query: 468 IHGLNRHYYSISINYRKNELEQKMLLNL 385
IH N Y + NY N +K+ N+
Sbjct: 89 IHNNNYKYNYNNNNYNNNNYNKKLYYNI 116
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 9.9
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -2
Query: 468 IHGLNRHYYSISINYRKNELEQKMLLNL 385
IH N Y + NY N +K+ N+
Sbjct: 89 IHNNNYKYNYNNNNYNNNNYNKKLYYNI 116
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,886
Number of Sequences: 438
Number of extensions: 4030
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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