Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10e23
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    29   0.84 
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    28   1.5  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   7.9  

>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -1

Query: 782 REFFVXPREQILR--PLSLRCPGTVCLPWKRHCHNSPSRTGTFLSRSTERSHHSP 624
           R +F+ P    L   P++L C GTVC    R+ ++S S      SR    +H  P
Sbjct: 14  RSYFICPGCNCLPDWPVTLPCGGTVCRKCFRNAYSSESSGKVSPSRCCFYNHKKP 68


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 800 VYREYNREFFVXPREQILRPLSLRCPGTVC 711
           VYR +N+E +V P  ++++ L     G VC
Sbjct: 7   VYRVFNQEMYVEPNFKVVKELGQGAYGIVC 36


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 713 CLPWKRHCHNSPSRTGTFLSRSTERSHH 630
           CL W RH  +S SR+G         ++H
Sbjct: 268 CLSWNRHVLSSGSRSGAIHHHDVRIANH 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,470,842
Number of Sequences: 5004
Number of extensions: 69503
Number of successful extensions: 158
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)