Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10e23
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0235 - 26609049-26609468,26610068-26610343,26611579-266117...    32   0.67 
01_05_0610 - 23636097-23638958                                         29   6.3  

>05_06_0235 -
           26609049-26609468,26610068-26610343,26611579-26611746,
           26611850-26611945
          Length = 319

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +2

Query: 653 WIGMFLSVMASCGNGASTVSTPSRDSEDLMASGFVPLGQQKTPCCILCTQI 805
           W G+   V A+CG+G   V + S + ++L   G V     + PCCI+ T +
Sbjct: 82  WCGVDEEVEAACGDG---VVSSSNEMQELWPLGEVDQKGTRFPCCIVWTPL 129


>01_05_0610 - 23636097-23638958
          Length = 953

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 715 TVPGQR-RLNGLRICSLGXTKNSLLYSLYTDFVSDFSSWLGMD 840
           TVP Q   L+ LR  SLG   NS LYS    ++S  SS   +D
Sbjct: 155 TVPPQLGNLSNLRYFSLGSNDNSSLYSTDVSWLSRLSSLEHLD 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,054,108
Number of Sequences: 37544
Number of extensions: 400940
Number of successful extensions: 860
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)