Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10e23
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29612-8|AAW57827.1|  108|Caenorhabditis elegans Heat shock prot...    61   9e-10
U29612-7|AAO61437.1|  205|Caenorhabditis elegans Heat shock prot...    61   9e-10
U29612-6|AAA68804.1|  219|Caenorhabditis elegans Heat shock prot...    61   9e-10
U64837-8|AAB04842.1|  145|Caenorhabditis elegans Heat shock prot...    36   0.028
U64837-5|AAB04839.1|  145|Caenorhabditis elegans Heat shock prot...    36   0.028
K03273-4|AAA28068.1|  145|Caenorhabditis elegans heat shock prot...    36   0.028
K03273-1|AAA28066.1|  146|Caenorhabditis elegans heat shock prot...    36   0.028
M14334-2|AAA28071.1|  145|Caenorhabditis elegans protein ( C.ele...    36   0.037
AC006774-1|AAF60615.1|  145|Caenorhabditis elegans Heat shock pr...    36   0.037
AC024830-3|AAF59604.3|  180|Caenorhabditis elegans Hypothetical ...    33   0.34 
U41109-5|AAB37035.1|  149|Caenorhabditis elegans Heat shock prot...    32   0.60 
U41109-4|AAQ62453.1|  148|Caenorhabditis elegans Heat shock prot...    32   0.60 
Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical pr...    30   1.8  
L26290-1|AAA27981.1|  441|Caenorhabditis elegans clathrin-associ...    30   1.8  
AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : short...    30   1.8  
Z48621-4|CAA88542.1|  160|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z68342-1|CAA92770.1|  109|Caenorhabditis elegans Hypothetical pr...    28   9.8  
U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical pr...    28   9.8  
U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>U29612-8|AAW57827.1|  108|Caenorhabditis elegans Heat shock protein
           protein 25,isoform c protein.
          Length = 108

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 33/60 (55%), Positives = 39/60 (65%)
 Frame = -3

Query: 855 DXKLLVHAQPRGEI*YEICVQRIQQGVFCXPKGTNPEAIKSSLSRDGVLTVEAPLPQLAI 676
           D +LLVHA+   +       +   Q  F  P+GTNPE I S+LS DGVLTVEAPLPQLAI
Sbjct: 48  DNRLLVHAKHEEKTPQRTVFREYNQE-FLLPRGTNPEQISSTLSTDGVLTVEAPLPQLAI 106


>U29612-7|AAO61437.1|  205|Caenorhabditis elegans Heat shock protein
           protein 25,isoform b protein.
          Length = 205

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 33/60 (55%), Positives = 39/60 (65%)
 Frame = -3

Query: 855 DXKLLVHAQPRGEI*YEICVQRIQQGVFCXPKGTNPEAIKSSLSRDGVLTVEAPLPQLAI 676
           D +LLVHA+   +       +   Q  F  P+GTNPE I S+LS DGVLTVEAPLPQLAI
Sbjct: 145 DNRLLVHAKHEEKTPQRTVFREYNQE-FLLPRGTNPEQISSTLSTDGVLTVEAPLPQLAI 203


>U29612-6|AAA68804.1|  219|Caenorhabditis elegans Heat shock protein
           protein 25,isoform a protein.
          Length = 219

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 33/60 (55%), Positives = 39/60 (65%)
 Frame = -3

Query: 855 DXKLLVHAQPRGEI*YEICVQRIQQGVFCXPKGTNPEAIKSSLSRDGVLTVEAPLPQLAI 676
           D +LLVHA+   +       +   Q  F  P+GTNPE I S+LS DGVLTVEAPLPQLAI
Sbjct: 159 DNRLLVHAKHEEKTPQRTVFREYNQE-FLLPRGTNPEQISSTLSTDGVLTVEAPLPQLAI 217


>U64837-8|AAB04842.1|  145|Caenorhabditis elegans Heat shock protein
           protein 16.11 protein.
          Length = 145

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 19/43 (44%), Positives = 28/43 (65%)
 Frame = -3

Query: 777 VFCXPKGTNPEAIKSSLSRDGVLTVEAPLPQLAITDRNIPIQK 649
           V   P+  +  A+ S+LS DG L++EAP  + AI  R+IPIQ+
Sbjct: 95  VILLPEDVDVGAVASNLSEDGKLSIEAPKKE-AIQGRSIPIQQ 136


>U64837-5|AAB04839.1|  145|Caenorhabditis elegans Heat shock protein
           protein 16.1 protein.
          Length = 145

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 19/43 (44%), Positives = 28/43 (65%)
 Frame = -3

Query: 777 VFCXPKGTNPEAIKSSLSRDGVLTVEAPLPQLAITDRNIPIQK 649
           V   P+  +  A+ S+LS DG L++EAP  + AI  R+IPIQ+
Sbjct: 95  VILLPEDVDVGAVASNLSEDGKLSIEAPKKE-AIQGRSIPIQQ 136


>K03273-4|AAA28068.1|  145|Caenorhabditis elegans heat shock protein
           16-1a protein.
          Length = 145

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 19/43 (44%), Positives = 28/43 (65%)
 Frame = -3

Query: 777 VFCXPKGTNPEAIKSSLSRDGVLTVEAPLPQLAITDRNIPIQK 649
           V   P+  +  A+ S+LS DG L++EAP  + AI  R+IPIQ+
Sbjct: 95  VILLPEDVDVGAVASNLSEDGKLSIEAPKKE-AIQGRSIPIQQ 136


>K03273-1|AAA28066.1|  146|Caenorhabditis elegans heat shock protein
           16-1 protein.
          Length = 146

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 19/43 (44%), Positives = 28/43 (65%)
 Frame = -3

Query: 777 VFCXPKGTNPEAIKSSLSRDGVLTVEAPLPQLAITDRNIPIQK 649
           V   P+  +  A+ S+LS DG L++EAP  + AI  R+IPIQ+
Sbjct: 96  VILLPEDVDVGAVASNLSEDGKLSIEAPKKE-AIQGRSIPIQQ 137


>M14334-2|AAA28071.1|  145|Caenorhabditis elegans protein (
           C.elegans heat shockprotein genes 16-41 and 16-2,
           complete cds, flanked byCeRep16 repetitive elements. ).
          Length = 145

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 18/43 (41%), Positives = 28/43 (65%)
 Frame = -3

Query: 777 VFCXPKGTNPEAIKSSLSRDGVLTVEAPLPQLAITDRNIPIQK 649
           V   P+  +  A+ S+LS DG L++EAP  + A+  R+IPIQ+
Sbjct: 95  VILLPEDVDVGAVASNLSEDGKLSIEAPKKE-AVQGRSIPIQQ 136


>AC006774-1|AAF60615.1|  145|Caenorhabditis elegans Heat shock
           protein protein 16.2 protein.
          Length = 145

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 18/43 (41%), Positives = 28/43 (65%)
 Frame = -3

Query: 777 VFCXPKGTNPEAIKSSLSRDGVLTVEAPLPQLAITDRNIPIQK 649
           V   P+  +  A+ S+LS DG L++EAP  + A+  R+IPIQ+
Sbjct: 95  VILLPEDVDVGAVASNLSEDGKLSIEAPKKE-AVQGRSIPIQQ 136


>AC024830-3|AAF59604.3|  180|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.6 protein.
          Length = 180

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 774 FCXPKGTNPEAIKSSLSRDGVLTVEAPLPQ 685
           F  PK   PE+++S L+ DG LT++A  P+
Sbjct: 128 FPLPKAVAPESVQSQLTADGHLTIDAKAPE 157


>U41109-5|AAB37035.1|  149|Caenorhabditis elegans Heat shock protein
           protein 17,isoform a protein.
          Length = 149

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -3

Query: 765 PKGTNPEAIKSSLSRDGVLTVE 700
           P G  PE IKS LS +GVLTV+
Sbjct: 107 PTGVRPEQIKSELSNNGVLTVK 128


>U41109-4|AAQ62453.1|  148|Caenorhabditis elegans Heat shock protein
           protein 17,isoform b protein.
          Length = 148

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -3

Query: 765 PKGTNPEAIKSSLSRDGVLTVE 700
           P G  PE IKS LS +GVLTV+
Sbjct: 106 PTGVRPEQIKSELSNNGVLTVK 127


>Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical
           protein F15D4.4 protein.
          Length = 608

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 343 QIIIPTSNSTSTVKANVTKATLTRRPCPTT 432
           Q  IPT+  TST     T  T+T  P PTT
Sbjct: 86  QTTIPTTTPTSTQTTTPTTTTITTTPVPTT 115


>L26290-1|AAA27981.1|  441|Caenorhabditis elegans
           clathrin-associated protein homologueprotein.
          Length = 441

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 774 FCXPKGTNPEAIKSSLSRDGVLTVEAPLP 688
           F  P+ T+P  +K+ +++ GV T +AP+P
Sbjct: 118 FGYPQNTDPGVLKTFITQQGVRTADAPVP 146


>AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform a protein.
          Length = 441

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 774 FCXPKGTNPEAIKSSLSRDGVLTVEAPLP 688
           F  P+ T+P  +K+ +++ GV T +AP+P
Sbjct: 118 FGYPQNTDPGVLKTFITQQGVRTADAPVP 146


>Z48621-4|CAA88542.1|  160|Caenorhabditis elegans Hypothetical
           protein R07B1.5 protein.
          Length = 160

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +1

Query: 352 IPTSNSTSTVKANVTKATLTRRPCPTTQIGI 444
           I TS ST+TV    T  T     C T QIGI
Sbjct: 41  IATSTSTTTVTTTTTVVTAACATCTTAQIGI 71


>Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical
           protein C03E10.5 protein.
          Length = 623

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 752 FVPLGQQKTPCCILCTQISYQISPRGWAWTSNL 850
           F+ LG Q+TP C+  +  +    P G+ W  N+
Sbjct: 303 FMVLGAQRTPACLYESSSAQCEKPSGYQWLDNV 335


>Z68342-1|CAA92770.1|  109|Caenorhabditis elegans Hypothetical
           protein F38E11.1 protein.
          Length = 109

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 765 PKGTNPEAIKSSLSRDGVLTV 703
           PKGT+P  IKS L   G+L +
Sbjct: 83  PKGTDPATIKSKLDGSGILHI 103


>U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical
           protein F49E10.2a protein.
          Length = 790

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +1

Query: 358 TSNSTSTVKANVTKATLTRRPCPTT 432
           TS STST     T  T T  P PTT
Sbjct: 625 TSTSTSTTTTTTTSTTATTTPQPTT 649


>U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical
           protein F49E10.2b protein.
          Length = 842

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +1

Query: 358 TSNSTSTVKANVTKATLTRRPCPTT 432
           TS STST     T  T T  P PTT
Sbjct: 625 TSTSTSTTTTTTTSTTATTTPQPTT 649


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,052,395
Number of Sequences: 27780
Number of extensions: 387325
Number of successful extensions: 888
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)