Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10e23
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       28   0.13 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.1  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   8.3  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = -1

Query: 506 ISKFINTTYLLVVICQLMFLRIPICVVGHGLRVNVALVTFAFTVLVEFEVGIIICRDCNK 327
           IS   NTT L+++ C+    +  I ++   L +   LVTF   +++  E+G  I      
Sbjct: 50  ISAIGNTTVLILITCRKRVSKSRIHIMLMHLAIADLLVTF---LMMPLEIGWAITVSWKA 106

Query: 326 NEL*CTILNSIRM 288
            ++ C I+   RM
Sbjct: 107 GDVMCRIMAFFRM 119


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 358 TSNSTSTVKANVTKATLTRRPCPTTQIGIRKNI 456
           +S STS   A+ T ATL    CP+  + ++ +I
Sbjct: 836 SSTSTSPRPASSTAATLVLSGCPSNMMELQVDI 868


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 683 SCGNGASTVSTPSRDSEDL 739
           SCG G + ++TP  DS+ +
Sbjct: 369 SCGGGPTILTTPGLDSDGI 387


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 689 HNSPSRTGTFLSRSTERSHHSP 624
           HNSPS TG+    S   +  SP
Sbjct: 59  HNSPSPTGSSPQHSGSSASTSP 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,187
Number of Sequences: 438
Number of extensions: 5056
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)