Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10e21
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 40 0.003
06_01_1179 + 10137652-10138038 32 0.53
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 31 0.93
07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,779... 31 1.6
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771 29 3.7
05_01_0301 - 2356880-2357959 29 4.9
12_01_0373 + 2897874-2898911 29 6.5
02_05_1134 - 34352154-34352375,34353683-34353746,34353820-343548... 29 6.5
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 28 8.6
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 28 8.6
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 39.5 bits (88), Expect = 0.003
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Frame = -1
Query: 726 ASATEVIND--EVSVGSKTIVAAPAVVVNDVIESSTG-ASATEVINDEVSVGSKTIVAAP 556
A+ TE+ D E SV ++ AA V V+E S AS+ E D+ +V K +
Sbjct: 475 ATETEIKEDSSEGSVTTEPTEAASTEFVTAVVEESAPTASSVETSEDDSTVDDKLVEPTA 534
Query: 555 AVVVNDVIESSTGASATEVINDEVSVGSKTIVAAP--AVVVNDPIESSTGASATEVINDE 382
+V + ES +S V + E SV + +AP +V + P ++ ASA E+I D
Sbjct: 535 SVSATEA-ESKEDSSEGSVASTE-SVTAVVEESAPVSSVAIEVPAPEASEASAQEIIEDS 592
Query: 381 ALV 373
V
Sbjct: 593 TTV 595
>06_01_1179 + 10137652-10138038
Length = 128
Score = 32.3 bits (70), Expect = 0.53
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = +2
Query: 371 LTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSS-LITSVALAPVEDSITSFT 547
+ A++ I++ A AP E + + AAT PT S+ A AP TS
Sbjct: 12 ILTAAAAISAAAQAPAESPSPKPSKSTAAATPAKAPTVASAPRKAGPAAAPTTTVATS-- 69
Query: 548 TTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGA 667
AG + + PT +++++ VA P + + F + AGA
Sbjct: 70 APAGGDEVSIPPTPFATVVSPVADGPADAADADF-SGAGA 108
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 31.5 bits (68), Expect = 0.93
Identities = 26/119 (21%), Positives = 46/119 (38%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
T+ S TS + +P S + + + V PT + TS A +P S + + +
Sbjct: 1616 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1675
Query: 554 AGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAATIVLEPTDTSSLITSVALAP 730
+ PT S TS + +P S + + + + PT TS + +P
Sbjct: 1676 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1734
Score = 29.5 bits (63), Expect = 3.7
Identities = 26/119 (21%), Positives = 45/119 (37%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
T+ S S +P S + + + PT S TS + +P S + + +
Sbjct: 1581 TSPSYTPGSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1640
Query: 554 AGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAATIVLEPTDTSSLITSVALAP 730
+ V PT + TS A +P S + + + + PT S TS + +P
Sbjct: 1641 YSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1699
Score = 29.1 bits (62), Expect = 4.9
Identities = 26/119 (21%), Positives = 44/119 (36%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTT 553
T+ S TS + +P S + + + PT S TS +P + + +
Sbjct: 1602 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPA 1661
Query: 554 AGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAATIVLEPTDTSSLITSVALAP 730
+ PT S TS + +P S + + + + PT S TS A +P
Sbjct: 1662 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1720
Score = 28.3 bits (60), Expect = 8.6
Identities = 23/112 (20%), Positives = 42/112 (37%)
Frame = +2
Query: 395 TSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAATIV 574
TS + +P S + + + PT S TS + +P S + + +
Sbjct: 1595 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPA 1654
Query: 575 LEPTDTSSLITSVALAPVEDSITSFTTTAGAATIVLEPTDTSSLITSVALAP 730
PT + TS + +P S + + + + PT S TS + +P
Sbjct: 1655 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1706
>07_01_0010 +
72162-74303,74470-74545,75971-76043,76496-76540,
77916-78116,78463-78541,78637-78678,78788-78847,
79087-80484,80777-80902,81037-81300
Length = 1501
Score = 30.7 bits (66), Expect = 1.6
Identities = 24/112 (21%), Positives = 44/112 (39%)
Frame = -1
Query: 720 ATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVN 541
ATE++ D V G ++N + A E+ N+ + G K + +V
Sbjct: 309 ATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVK 368
Query: 540 DVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVIND 385
+ A +V+N+ G + +V+N + + AT V+ND
Sbjct: 369 GLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMND 420
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/82 (21%), Positives = 35/82 (42%)
Frame = -1
Query: 720 ATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVN 541
A E+ N+ + G K + +V + A +V+N+ G + +V+N
Sbjct: 344 ALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVIN 403
Query: 540 DVIESSTGASATEVINDEVSVG 475
+ + + AT V+ND + G
Sbjct: 404 GLCKMGNISDATVVMNDAIMKG 425
>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
Length = 372
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = -1
Query: 675 IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEVI 496
+ A A + DV+ +G V+ND+ G ++ VVV + G A E+
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332
Query: 495 NDEV 484
++E+
Sbjct: 333 SEEI 336
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -1
Query: 570 IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVI 391
+ A A + DV+ +G V+ND+ G ++ VVV + G A E+
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332
Query: 390 NDE 382
++E
Sbjct: 333 SEE 335
>05_01_0301 - 2356880-2357959
Length = 359
Score = 29.1 bits (62), Expect = 4.9
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Frame = +2
Query: 425 SIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAATIVLEPTDTSSLI 604
+IG T A V++ D SL+ + A AP S+ + A AT+ + P D
Sbjct: 214 AIGDEMTAASGIGGVVDENDPRSLVCAYAFAPCGYSMNALDG-ARYATVHVTPEDGHCYA 272
Query: 605 T--------SVALAPVEDSITSFTTTAGAATIVLEPTDTSSLITSVALA 727
+ + ALA + ++ +F + +I + SSL T VA A
Sbjct: 273 SFECATDDAAAALAAIRRAVAAFRPATVSVSISHTSSAASSLCTPVAEA 321
>12_01_0373 + 2897874-2898911
Length = 345
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 389 LITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAA 565
L+ ++A P S + TTT AAT T S+ TS + TS T A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTST----TSNGATSVTAAATAA 308
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 494 LITSVALAPVEDSITSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAA 670
L+ ++A P S + TTT AAT T S+ TS + TS T A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTST----TSNGATSVTAAATAA 308
>02_05_1134 - 34352154-34352375,34353683-34353746,34353820-34354859,
34355193-34355261,34355502-34355606,34355992-34356161,
34356244-34356351,34356397-34356525,34356577-34356681,
34357186-34357475,34357575-34357679,34358195-34358289,
34358474-34358569,34358660-34358782,34359120-34359174,
34359254-34359417,34359881-34359971,34360180-34360334,
34360823-34361002,34361314-34361487,34361776-34361917,
34362023-34362325,34362443-34362522
Length = 1354
Score = 28.7 bits (61), Expect = 6.5
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Frame = -1
Query: 726 ASATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEVINDE-VSVGSKTIVAAP-A 553
+++T+++ D +S+GS P + ++ T V + + VS S+ P A
Sbjct: 689 SASTDILIDLLSIGSSPSQNGPPAADSTPAQAITELFKINVPDTKPVSTISQVGAIVPEA 748
Query: 552 VVVNDVIESSTGASATEVINDEVSVGSKTIVAAPA-VVVNDPIESSTGAS 406
V + SST SA ++D G+K+ A P + + D + S+T S
Sbjct: 749 TDVLSSLSSSTSVSAFAKMSDTSIAGTKSAPAVPQDMDLLDGLPSNTSVS 798
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 28.3 bits (60), Expect = 8.6
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Frame = +2
Query: 398 SVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVED--SITSF-TTTAGAAT 568
S LA +D +GS TTA A+ + E T + + + S + V+D SI+ + AG+
Sbjct: 3066 SAQLADGDDLVGSKDTTAAHASGLKELT-SGNYVASSSSHVVQDVTSISKMESVQAGSEE 3124
Query: 569 IVLEPTDTSSLITSVALAPVEDS-ITSFTTTAGAATIVLEP-TDTSSLITS 715
I +D + I S + PV + IT + A A I ++P +T + +T+
Sbjct: 3125 IYHGYSDET--IHSARIKPVVGTEITENASVASAPVITIQPDIETEAGVTA 3173
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 279 YSNLVALRYLKLLVQPQPRLL*WFLL 356
Y+N AL+YL +PRLL W LL
Sbjct: 547 YTNHAALKYLLTKKDAKPRLLRWILL 572
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,284,156
Number of Sequences: 37544
Number of extensions: 293101
Number of successful extensions: 831
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -