Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10e20
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.7  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    26   5.1  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    26   5.1  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   8.8  

>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 193 LLKNKYMDKTSRPIAKKWT*PRNYTYWLVCDLR 291
           L  N + ++    + + WT P +YTY LV DL+
Sbjct: 309 LFINLHFNQKDLNLIEVWTPPNDYTYALVVDLQ 341


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
 Frame = -3

Query: 324 PSFGSVFGTPKPEV---TDKPVSVISW 253
           P +G VFG  KP +   T  PVS   W
Sbjct: 403 PLYGDVFGNVKPRIHAGTGSPVSTQHW 429


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 262 YTYWLVCDLRLRGAENRTK*RHLI*NKTFMFGTTFRNEG-HDLQKPR 399
           Y Y LV  +R        +   L+ N  F+F  TF N+G H  + PR
Sbjct: 246 YKYDLVLQIRFLNRALLRQSSSLLRNNGFLFLCTFVNDGVHQYEHPR 292


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 332 FRIRRSCLARPLEMKDTTYKNREQNKFDTGYLDRFILRQ 448
           FR     L R LE K+ +     +N+F TG+LDR I ++
Sbjct: 546 FRTTVEYLVRLLETKEFS-----ENEFTTGWLDRLIAQK 579


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,383,670
Number of Sequences: 5004
Number of extensions: 46373
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)