Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10e19
(332 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112... 29 0.91
10_07_0162 - 13713504-13714754,13716445-13716522 27 2.8
06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614... 27 2.8
04_03_0314 - 14238620-14240128 27 3.7
11_01_0583 + 4636832-4637521 27 4.9
05_01_0196 + 1415664-1416842 27 4.9
10_08_0454 - 18049817-18050305 26 6.4
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 26 6.4
07_03_1695 - 28775525-28776098,28776586-28776693,28777129-28777448 26 6.4
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466... 26 6.4
01_01_0522 - 3834551-3835451,3835992-3836572 26 6.4
02_04_0029 + 19036176-19036481,19036602-19036733,19036814-190369... 26 8.5
>02_05_0075 -
25610386-25610508,25610529-25610583,25610801-25611240,
25612951-25613619,25614551-25615870
Length = 868
Score = 29.1 bits (62), Expect = 0.91
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 170 WREALQLQPSRITGI*WPEALYQS*LPPP**HQLHKFVKNR 48
W EAL L P + G P +LYQ L P +L++ V+ R
Sbjct: 192 WSEALNLSPPGVRGGALPPSLYQHLLRAPGPPKLYRGVRQR 232
>10_07_0162 - 13713504-13714754,13716445-13716522
Length = 442
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 226 RVFDPNRGTSARLQRIGNNGGKHCSFSPVVLREFNGR 116
RV+DPN GT A+ ++ G +F L NG+
Sbjct: 339 RVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGK 375
>06_03_1119 +
27760412-27760527,27760851-27761010,27761283-27761449,
27761525-27761629,27762097-27762864,27762942-27763131,
27763763-27763940,27764106-27764497
Length = 691
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 6 IXNFNPECIDEQQLSVFDKLMELVLSW--RRQSTLI*CFRPLNSRNTTGLKL 155
+ + NP CI +QL + + L+ +W R S I FR L+ N+ KL
Sbjct: 393 LSHVNPSCICFEQLKITNSLVHKESNWHLERLSDEIDLFRELHDDNSKFAKL 444
>04_03_0314 - 14238620-14240128
Length = 502
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 146 AEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNP 283
+ ++ L + P + P R + + NPP APPT +R P
Sbjct: 6 SSSSSLSFLSPQPIHPRR---VRLPNPPPSTAAPPTPTAVRCTPAP 48
>11_01_0583 + 4636832-4637521
Length = 229
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 110 MLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPP 250
+L A KF Y W+ ++ A++P+ L + AT + +P + A P
Sbjct: 182 VLLATKFN-YIWSLLDLMEAVLPEYLSETGTATTTVPSPDVAAAAAP 227
>05_01_0196 + 1415664-1416842
Length = 392
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 43 SYLFLTNLWSWCYHGGGSQL*YNASGH*IPVIRLG*SCNASRHYSRCA 186
+Y F T SW H G L + G +P ++L +A +Y+ CA
Sbjct: 227 TYCFDTVSCSWS-HAGDWMLPFCGKGEYVPELKLWFGVSAKNNYAPCA 273
>10_08_0454 - 18049817-18050305
Length = 162
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 181 CAEAEQRCHDWDQKPSHAKNGSAYDVNY*GSEKSHD 288
CA A + HD KP H G + G EK D
Sbjct: 27 CAVARRHHHDHHDKPGHHDGGFPAVMTVNGFEKGED 62
>08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 154 SFSPVVLREFNGRKHYIKVDCRRHDSTNSISLSKTDNCCSS 32
SF V EF H + C+ HD + ++ TD C S+
Sbjct: 1347 SFLQDVKEEFIIGYHCDSIVCKMHDLMHDLAKDVTDECAST 1387
>07_03_1695 - 28775525-28776098,28776586-28776693,28777129-28777448
Length = 333
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +1
Query: 151 SCNASRHYSRCAEA-EQRCHDWDQKPSHAKNGSAYDVNY*GSEKSHDP 291
S N R Y RC +Q C Q + N S + ++Y G DP
Sbjct: 138 SPNNPRSYYRCTHRPDQGCMATKQVQTSESNSSEFVISYYGEHTCSDP 185
>01_07_0374 + 43144861-43144998,43145695-43145794,43146499-43146651,
43147383-43150081
Length = 1029
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +2
Query: 173 IPDALKPSRGATIGIKNP---PMQRTAPPTMLTIRAVKNPMILKSQ*LLTRYT 322
+PDA P+ GA G P P+ R A + + +++ P K LL R T
Sbjct: 958 LPDADGPAAGAGAGATTPPPLPLTRVASKSKVPLQSFLFPAKAKKPSLLARVT 1010
>01_01_0522 - 3834551-3835451,3835992-3836572
Length = 493
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +2
Query: 170 IIPDALKPSRGATIGIKN--PPMQRTAPPTM 256
++P L+P+R A G K PP PPT+
Sbjct: 243 VVPKLLRPARSAAAGGKPPLPPPSSCVPPTI 273
>02_04_0029 +
19036176-19036481,19036602-19036733,19036814-19036933,
19037763-19037837,19038282-19038392,19038528-19038635,
19038865-19038933,19038934-19039004,19039095-19039147,
19039223-19039326,19039424-19039696
Length = 473
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 12 NFNPECIDEQQLSVFDKLMELVLSWRRQ 95
N + CI + Q VF+KL++ V+ W+R+
Sbjct: 297 NMHGYCITDSQ--VFEKLIQNVMRWKRR 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,821,717
Number of Sequences: 37544
Number of extensions: 200700
Number of successful extensions: 488
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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