Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10e19
         (332 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81049-2|CAB02847.2|  576|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   3.3  
U52002-9|AAB37727.2|  839|Caenorhabditis elegans Human dice1 (de...    27   3.3  
U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1 (de...    27   3.3  
AB030946-1|BAA90483.1|  576|Caenorhabditis elegans high-affinity...    27   3.3  
U41556-10|AAM51520.1|  415|Caenorhabditis elegans Hypothetical p...    26   7.5  
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami...    26   7.5  
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    25   10.0 
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    25   10.0 
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    25   10.0 
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    25   10.0 
AF024503-1|AAG24089.2|  527|Caenorhabditis elegans Hypothetical ...    25   10.0 

>Z81049-2|CAB02847.2|  576|Caenorhabditis elegans Hypothetical
           protein C48D1.3 protein.
          Length = 576

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 330 ICIVYLVRSYCDLRIMGFFTALIVNIVGGAVL 235
           +C+VY+ RS     + G+   L++ ++GG  L
Sbjct: 424 LCVVYMPRSNTYGSLAGYAVGLVLRLIGGEPL 455


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +2

Query: 98  NFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 238
           NF IM P +++  + W+ +     ++   L+ +RG T  + + P++R
Sbjct: 465 NFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +2

Query: 98  NFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 238
           NF IM P +++  + W+ +     ++   L+ +RG T  + + P++R
Sbjct: 465 NFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511


>U52002-9|AAB37727.2|  839|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform a protein.
          Length = 839

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -2

Query: 223 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 101
           +FDPN+ T   + ++G     +    C F P+ L     RK YI+
Sbjct: 578 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 622


>U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform b protein.
          Length = 842

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -2

Query: 223 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 101
           +FDPN+ T   + ++G     +    C F P+ L     RK YI+
Sbjct: 581 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 625


>AB030946-1|BAA90483.1|  576|Caenorhabditis elegans high-affinity
           choline transporterCHO-1 protein.
          Length = 576

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 330 ICIVYLVRSYCDLRIMGFFTALIVNIVGGAVL 235
           +C+VY+ RS     + G+   L++ ++GG  L
Sbjct: 424 LCVVYMPRSNTYGSLAGYAVGLVLRLIGGEPL 455


>U41556-10|AAM51520.1|  415|Caenorhabditis elegans Hypothetical
           protein C25B8.7 protein.
          Length = 415

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 19  IQNVLTSSSYLFLTNLWSWC 78
           I+N  TS +++F T LW+ C
Sbjct: 255 IENKATSFAFIFATTLWTSC 274


>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
           protein 10 protein.
          Length = 2302

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 170 IIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNPMILKSQ 301
           + PD+LK  R   + +KNP  Q+      + +R + +P  LK+Q
Sbjct: 858 LTPDSLKSLRLIGMTLKNPDSQK----INILVRLISSPEYLKNQ 897


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
            F25C8.3b protein.
          Length = 3175

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 133  REFNGRKHYIKVDCRRHDSTNSISLSKTDNCCSSIHSGLK 14
            ++  GR+  + V  R H +T S      ++ C +I+ GLK
Sbjct: 2832 QDVTGRQGSVSVTDRGHSATVSTHRIVRESICQAIYLGLK 2871


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
            F25C8.3a protein.
          Length = 3184

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 133  REFNGRKHYIKVDCRRHDSTNSISLSKTDNCCSSIHSGLK 14
            ++  GR+  + V  R H +T S      ++ C +I+ GLK
Sbjct: 2841 QDVTGRQGSVSVTDRGHSATVSTHRIVRESICQAIYLGLK 2880


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
            F40E10.4 protein.
          Length = 1410

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -2

Query: 166  GKHCSFSPVVLREFNGRKHYIKVDCRRHDSTNSISLS----KTDNCCSSI 29
            G+HC    +   +   R+H+I+ +CR  D       +       NCC+++
Sbjct: 1322 GEHCDEKRIKCDKQKFRRHHIENECRSVDRIKIAECNGYCGGEQNCCTAV 1371


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
            protein F40E10.4 protein.
          Length = 1410

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -2

Query: 166  GKHCSFSPVVLREFNGRKHYIKVDCRRHDSTNSISLS----KTDNCCSSI 29
            G+HC    +   +   R+H+I+ +CR  D       +       NCC+++
Sbjct: 1322 GEHCDEKRIKCDKQKFRRHHIENECRSVDRIKIAECNGYCGGEQNCCTAV 1371


>AF024503-1|AAG24089.2|  527|Caenorhabditis elegans Hypothetical
           protein F31F4.7 protein.
          Length = 527

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -3

Query: 300 CDLRIMGFFTALIVNIVGGAVLCMGGFLIPIVAPLL 193
           C+LR MGF T  ++++    V+C+  F++ ++  L+
Sbjct: 479 CNLRTMGFATYHLLDV----VVCLTSFVVLVILSLV 510


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,915,947
Number of Sequences: 27780
Number of extensions: 153407
Number of successful extensions: 353
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)