Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10e18
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   140   7e-35
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   139   2e-34

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  140 bits (340), Expect = 7e-35
 Identities = 68/114 (59%), Positives = 79/114 (69%)
 Frame = -2

Query: 439 PALNGKLTGMAXRVPVANVSVVDLTVXLGXLASYXXXXXXXXXXXEGPXKGILGYTEDQX 260
           PALNGKLTGMA RVP  +VSVVDLTV L    +Y           EGP KG+LGYTED  
Sbjct: 222 PALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDSV 281

Query: 259 VSSDFIGDSHSSIXDAAAGXSXNDNFXKLISWYDNEYGYSSRVIDLIKXIQSKD 98
           VS+DF GD+HSSI DA+AG   +  F KL+SWYDNE+GYS RV+DL+    SKD
Sbjct: 282 VSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLVAYTASKD 335


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  139 bits (336), Expect = 2e-34
 Identities = 67/114 (58%), Positives = 79/114 (69%)
 Frame = -2

Query: 439 PALNGKLTGMAXRVPVANVSVVDLTVXLGXLASYXXXXXXXXXXXEGPXKGILGYTEDQX 260
           PALNGKLTGMA RVP  +VSVVDLTV L    +Y           EGP KG+LGYTED  
Sbjct: 222 PALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDAV 281

Query: 259 VSSDFIGDSHSSIXDAAAGXSXNDNFXKLISWYDNEYGYSSRVIDLIKXIQSKD 98
           VS+DF GD+HSSI DA+AG   +  F KL+SWYDNE+GYS RV+DL+    +KD
Sbjct: 282 VSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSRRVVDLVAYTAAKD 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,262,772
Number of Sequences: 5004
Number of extensions: 16535
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)