Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10e18
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811...   138   2e-33
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478...   136   1e-32
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151...   135   1e-32
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182...   132   1e-31
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386...   129   1e-30
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164...    83   8e-17
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127...    79   2e-15

>04_04_0306 +
           24280773-24280776,24280906-24280929,24281023-24281123,
           24281359-24281502,24281667-24281782,24281869-24281968,
           24282068-24282214,24282329-24282389,24282480-24282577,
           24283118-24283260,24283374-24283457,24283538-24283627,
           24284018-24284063
          Length = 385

 Score =  138 bits (334), Expect = 2e-33
 Identities = 69/108 (63%), Positives = 78/108 (72%)
 Frame = -2

Query: 439 PALNGKLTGMAXRVPVANVSVVDLTVXLGXLASYXXXXXXXXXXXEGPXKGILGYTEDQX 260
           PALNGKLTGMA RVP  +VSVVDLTV L   ASY           EG  KGILGY E+  
Sbjct: 272 PALNGKLTGMAFRVPTVDVSVVDLTVRLEKPASYDQIKAAIKEESEGKLKGILGYVEEDL 331

Query: 259 VSSDFIGDSHSSIXDAAAGXSXNDNFXKLISWYDNEYGYSSRVIDLIK 116
           VS+DF GD+ SSI DA AG + NDNF KL+SWYDNE+GYSSRV+DLI+
Sbjct: 332 VSTDFQGDNRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRVVDLIR 379


>02_04_0507 +
           23546911-23546953,23547011-23547111,23547695-23547810,
           23547897-23547996,23548027-23548215,23548303-23548363,
           23548469-23548566,23548943-23549085,23549228-23549311,
           23549423-23549512,23549599-23549644
          Length = 356

 Score =  136 bits (328), Expect = 1e-32
 Identities = 69/112 (61%), Positives = 79/112 (70%)
 Frame = -2

Query: 439 PALNGKLTGMAXRVPVANVSVVDLTVXLGXLASYXXXXXXXXXXXEGPXKGILGYTEDQX 260
           PALNGKLTGMA RVP  +VSVVDLTV L   ASY           EG  KGILGY E+  
Sbjct: 243 PALNGKLTGMAFRVPTVDVSVVDLTVRLEKPASYDQIKAAIKEEAEGKLKGILGYVEEDL 302

Query: 259 VSSDFIGDSHSSIXDAAAGXSXNDNFXKLISWYDNEYGYSSRVIDLIKXIQS 104
           VS+DF GDS SSI DA AG + +D F KL+SWYDNE+GYS+RVIDLI+ + S
Sbjct: 303 VSTDFQGDSRSSIFDAKAGIALSDTFVKLVSWYDNEWGYSTRVIDLIRHMHS 354


>08_01_0179 +
           1519141-1519144,1519278-1519301,1519417-1519517,
           1519805-1519920,1519944-1520112,1520713-1520859,
           1520943-1521003,1521086-1521183,1521608-1521750,
           1521980-1522063,1522191-1522280,1522375-1522420
          Length = 360

 Score =  135 bits (327), Expect = 1e-32
 Identities = 65/108 (60%), Positives = 78/108 (72%)
 Frame = -2

Query: 439 PALNGKLTGMAXRVPVANVSVVDLTVXLGXLASYXXXXXXXXXXXEGPXKGILGYTEDQX 260
           P LNGKLTGM+ RVP  +VSVVDLTV +   ASY           EG  KGI+GY E+  
Sbjct: 247 PDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDL 306

Query: 259 VSSDFIGDSHSSIXDAAAGXSXNDNFXKLISWYDNEYGYSSRVIDLIK 116
           VS+DF+GDS SSI DA AG + NDNF KL++WYDNE+GYS+RVIDLI+
Sbjct: 307 VSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIR 354


>06_03_1052 -
           27217792-27217846,27218025-27218114,27218191-27218274,
           27218526-27218668,27218748-27218845,27218959-27219019,
           27219184-27219330,27219428-27219527,27219701-27219813,
           27220302-27220402,27220614-27220652,27220739-27220797,
           27221027-27221088,27221411-27221506
          Length = 415

 Score =  132 bits (320), Expect = 1e-31
 Identities = 66/107 (61%), Positives = 76/107 (71%)
 Frame = -2

Query: 439 PALNGKLTGMAXRVPVANVSVVDLTVXLGXLASYXXXXXXXXXXXEGPXKGILGYTEDQX 260
           PALNGKLTGMA RVP  NVSVVDLT  L   ASY           EG  KGILGYT++  
Sbjct: 299 PALNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKEASEGSLKGILGYTDEDV 358

Query: 259 VSSDFIGDSHSSIXDAAAGXSXNDNFXKLISWYDNEYGYSSRVIDLI 119
           VS+DFIGD+ SSI DA AG   + +F KL+SWYDNE+GYS+RV+DLI
Sbjct: 359 VSNDFIGDTRSSIFDAKAGIGLSSSFMKLVSWYDNEWGYSNRVLDLI 405


>02_01_0533 +
           3868230-3868564,3869040-3869098,3869187-3869225,
           3869629-3869729,3870288-3870400,3870976-3871075,
           3871170-3871316,3871442-3871502,3871616-3871713,
           3871786-3871928,3872221-3872304,3872389-3872478,
           3872574-3872628
          Length = 474

 Score =  129 bits (312), Expect = 1e-30
 Identities = 63/107 (58%), Positives = 75/107 (70%)
 Frame = -2

Query: 439 PALNGKLTGMAXRVPVANVSVVDLTVXLGXLASYXXXXXXXXXXXEGPXKGILGYTEDQX 260
           P LNGKLTGMA RVP  NVSVVDLT  +   ASY           EG  KGILGYT++  
Sbjct: 358 PELNGKLTGMAFRVPTPNVSVVDLTCRIEKSASYDDVKAAIKAASEGALKGILGYTDEDV 417

Query: 259 VSSDFIGDSHSSIXDAAAGXSXNDNFXKLISWYDNEYGYSSRVIDLI 119
           VS+DF+GD+ SSI DA AG   + +F KL+SWYDNE+GYS+RV+DLI
Sbjct: 418 VSNDFVGDARSSIFDAKAGIGLSSSFMKLVSWYDNEWGYSNRVLDLI 464


>03_01_0208 +
           1642041-1642118,1642200-1642310,1643157-1643318,
           1643433-1643600,1643683-1643843,1643930-1643991,
           1644078-1644127,1644247-1644653,1644760-1644895
          Length = 444

 Score = 83.4 bits (197), Expect = 8e-17
 Identities = 50/116 (43%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
 Frame = -2

Query: 439 PALNGKLTGMAXRVPVANVSVVDL---TVXLGXLASYXXXXXXXXXXXEGPXKGILGYTE 269
           P L GKL G+A RVP  NVSVVDL   TV  G  A              GP  GIL   +
Sbjct: 300 PQLKGKLNGIALRVPTPNVSVVDLVINTVKTGITAD--DVNAAFRKAAAGPLSGILDVCD 357

Query: 268 DQXVSSDFIGDSHSSIXDAAAGXSXNDNFXKLISWYDNEYGYSSRVIDLIKXIQSK 101
              VS DF     SS  DA+      D+  K+++WYDNE+GYS RV+DL   + SK
Sbjct: 358 VPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASK 413


>04_04_0120 +
           22911863-22911904,22912002-22912112,22912212-22912764,
           22912852-22913354
          Length = 402

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 44/113 (38%), Positives = 56/113 (49%)
 Frame = -2

Query: 439 PALNGKLTGMAXRVPVANVSVVDLTVXLGXLASYXXXXXXXXXXXEGPXKGILGYTEDQX 260
           P L GKL G+A RVP  NVSVVDL V +                     KGIL   +   
Sbjct: 288 PNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTLAEEVNQAFRDSAANELKGILEVCDVPL 347

Query: 259 VSSDFIGDSHSSIXDAAAGXSXNDNFXKLISWYDNEYGYSSRVIDLIKXIQSK 101
           VS DF     S   DA+      D+  K+I+WYDNE+GYS RV+DL   + ++
Sbjct: 348 VSVDFRCSDVSCTIDASLSMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQ 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,010,646
Number of Sequences: 37544
Number of extensions: 104443
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)