Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10e18
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49070-2|CAA88870.1|  341|Caenorhabditis elegans Hypothetical pr...   138   2e-33
X52674-1|CAA36900.1|  341|Caenorhabditis elegans gpd-1 protein.       138   2e-33
X04818-1|CAA28504.1|  341|Caenorhabditis elegans glyceraldehyde-...   138   2e-33
Z48783-3|CAA88697.1|  341|Caenorhabditis elegans Hypothetical pr...   136   7e-33
X52673-1|CAA36899.1|  341|Caenorhabditis elegans gpd-4 protein.       136   7e-33
X15254-2|CAA33327.1|  341|Caenorhabditis elegans gpd-3 gene prod...   134   4e-32
X15254-1|CAA33326.1|  341|Caenorhabditis elegans gpd-2 gene prod...   134   4e-32
U49941-6|AAB53874.1|  341|Caenorhabditis elegans Gpd (glyceralde...   134   4e-32
U49941-5|AAB53869.1|  341|Caenorhabditis elegans Gpd (glyceralde...   134   4e-32
U97405-3|AAB53008.1|  192|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF026209-11|AAB71282.1|  353|Caenorhabditis elegans Seven tm rec...    27   6.8  

>Z49070-2|CAA88870.1|  341|Caenorhabditis elegans Hypothetical
           protein T09F3.3 protein.
          Length = 341

 Score =  138 bits (333), Expect = 2e-33
 Identities = 69/113 (61%), Positives = 78/113 (69%)
 Frame = -2

Query: 439 PALNGKLTGMAXRVPVANVSVVDLTVXLGXLASYXXXXXXXXXXXEGPXKGILGYTEDQX 260
           P LNGKLTGMA RVP  +VSVVDLTV L   AS            +GP KGIL YTEDQ 
Sbjct: 228 PELNGKLTGMAFRVPTPDVSVVDLTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQV 287

Query: 259 VSSDFIGDSHSSIXDAAAGXSXNDNFXKLISWYDNEYGYSSRVIDLIKXIQSK 101
           VS+DF+ D HSSI DA A  S N NF KL+SWYDNEYGYS+RV+DLI  I ++
Sbjct: 288 VSTDFVSDPHSSIFDAGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIATR 340


>X52674-1|CAA36900.1|  341|Caenorhabditis elegans gpd-1 protein.
          Length = 341

 Score =  138 bits (333), Expect = 2e-33
 Identities = 69/113 (61%), Positives = 78/113 (69%)
 Frame = -2

Query: 439 PALNGKLTGMAXRVPVANVSVVDLTVXLGXLASYXXXXXXXXXXXEGPXKGILGYTEDQX 260
           P LNGKLTGMA RVP  +VSVVDLTV L   AS            +GP KGIL YTEDQ 
Sbjct: 228 PELNGKLTGMAFRVPTPDVSVVDLTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQV 287

Query: 259 VSSDFIGDSHSSIXDAAAGXSXNDNFXKLISWYDNEYGYSSRVIDLIKXIQSK 101
           VS+DF+ D HSSI DA A  S N NF KL+SWYDNEYGYS+RV+DLI  I ++
Sbjct: 288 VSTDFVSDPHSSIFDAGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIATR 340


>X04818-1|CAA28504.1|  341|Caenorhabditis elegans
           glyceraldehyde-3-phosphate dehydrogenaseprotein.
          Length = 341

 Score =  138 bits (333), Expect = 2e-33
 Identities = 69/113 (61%), Positives = 78/113 (69%)
 Frame = -2

Query: 439 PALNGKLTGMAXRVPVANVSVVDLTVXLGXLASYXXXXXXXXXXXEGPXKGILGYTEDQX 260
           P LNGKLTGMA RVP  +VSVVDLTV L   AS            +GP KGIL YTEDQ 
Sbjct: 228 PELNGKLTGMAFRVPTPDVSVVDLTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQV 287

Query: 259 VSSDFIGDSHSSIXDAAAGXSXNDNFXKLISWYDNEYGYSSRVIDLIKXIQSK 101
           VS+DF+ D HSSI DA A  S N NF KL+SWYDNEYGYS+RV+DLI  I ++
Sbjct: 288 VSTDFVSDPHSSIFDAGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIATR 340


>Z48783-3|CAA88697.1|  341|Caenorhabditis elegans Hypothetical
           protein F33H1.2 protein.
          Length = 341

 Score =  136 bits (329), Expect = 7e-33
 Identities = 68/113 (60%), Positives = 77/113 (68%)
 Frame = -2

Query: 439 PALNGKLTGMAXRVPVANVSVVDLTVXLGXLASYXXXXXXXXXXXEGPXKGILGYTEDQX 260
           P LNGKLTGMA RVP  +VSVVDLTV L   AS            +GP KGIL YTEDQ 
Sbjct: 228 PELNGKLTGMAFRVPTPDVSVVDLTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQV 287

Query: 259 VSSDFIGDSHSSIXDAAAGXSXNDNFXKLISWYDNEYGYSSRVIDLIKXIQSK 101
           VS+DF+ D HSSI D  A  S N NF KL+SWYDNEYGYS+RV+DLI  I ++
Sbjct: 288 VSTDFVSDPHSSIFDTGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIATR 340


>X52673-1|CAA36899.1|  341|Caenorhabditis elegans gpd-4 protein.
          Length = 341

 Score =  136 bits (329), Expect = 7e-33
 Identities = 68/113 (60%), Positives = 77/113 (68%)
 Frame = -2

Query: 439 PALNGKLTGMAXRVPVANVSVVDLTVXLGXLASYXXXXXXXXXXXEGPXKGILGYTEDQX 260
           P LNGKLTGMA RVP  +VSVVDLTV L   AS            +GP KGIL YTEDQ 
Sbjct: 228 PELNGKLTGMAFRVPTPDVSVVDLTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQV 287

Query: 259 VSSDFIGDSHSSIXDAAAGXSXNDNFXKLISWYDNEYGYSSRVIDLIKXIQSK 101
           VS+DF+ D HSSI D  A  S N NF KL+SWYDNEYGYS+RV+DLI  I ++
Sbjct: 288 VSTDFVSDPHSSIFDTGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIATR 340


>X15254-2|CAA33327.1|  341|Caenorhabditis elegans gpd-3 gene product
           protein.
          Length = 341

 Score =  134 bits (323), Expect = 4e-32
 Identities = 66/113 (58%), Positives = 78/113 (69%)
 Frame = -2

Query: 439 PALNGKLTGMAXRVPVANVSVVDLTVXLGXLASYXXXXXXXXXXXEGPXKGILGYTEDQX 260
           P LNGKLTGMA RVP  +VSVVDLT  L   AS            +GP KGIL YTEDQ 
Sbjct: 228 PELNGKLTGMAFRVPTPDVSVVDLTARLEKPASLDDIKKVIKAAADGPMKGILAYTEDQV 287

Query: 259 VSSDFIGDSHSSIXDAAAGXSXNDNFXKLISWYDNEYGYSSRVIDLIKXIQSK 101
           VS+DF+ D++SSI DA A  S N +F KL+SWYDNE+GYS+RV+DLI  I +K
Sbjct: 288 VSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIATK 340


>X15254-1|CAA33326.1|  341|Caenorhabditis elegans gpd-2 gene product
           protein.
          Length = 341

 Score =  134 bits (323), Expect = 4e-32
 Identities = 66/113 (58%), Positives = 78/113 (69%)
 Frame = -2

Query: 439 PALNGKLTGMAXRVPVANVSVVDLTVXLGXLASYXXXXXXXXXXXEGPXKGILGYTEDQX 260
           P LNGKLTGMA RVP  +VSVVDLT  L   AS            +GP KGIL YTEDQ 
Sbjct: 228 PELNGKLTGMAFRVPTPDVSVVDLTARLEKPASLDDIKKVIKAAADGPMKGILAYTEDQV 287

Query: 259 VSSDFIGDSHSSIXDAAAGXSXNDNFXKLISWYDNEYGYSSRVIDLIKXIQSK 101
           VS+DF+ D++SSI DA A  S N +F KL+SWYDNE+GYS+RV+DLI  I +K
Sbjct: 288 VSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIATK 340


>U49941-6|AAB53874.1|  341|Caenorhabditis elegans Gpd
           (glyceraldehyde 3-phosphatedehydrogenase) protein 2
           protein.
          Length = 341

 Score =  134 bits (323), Expect = 4e-32
 Identities = 66/113 (58%), Positives = 78/113 (69%)
 Frame = -2

Query: 439 PALNGKLTGMAXRVPVANVSVVDLTVXLGXLASYXXXXXXXXXXXEGPXKGILGYTEDQX 260
           P LNGKLTGMA RVP  +VSVVDLT  L   AS            +GP KGIL YTEDQ 
Sbjct: 228 PELNGKLTGMAFRVPTPDVSVVDLTARLEKPASLDDIKKVIKAAADGPMKGILAYTEDQV 287

Query: 259 VSSDFIGDSHSSIXDAAAGXSXNDNFXKLISWYDNEYGYSSRVIDLIKXIQSK 101
           VS+DF+ D++SSI DA A  S N +F KL+SWYDNE+GYS+RV+DLI  I +K
Sbjct: 288 VSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIATK 340


>U49941-5|AAB53869.1|  341|Caenorhabditis elegans Gpd
           (glyceraldehyde 3-phosphatedehydrogenase) protein 3
           protein.
          Length = 341

 Score =  134 bits (323), Expect = 4e-32
 Identities = 66/113 (58%), Positives = 78/113 (69%)
 Frame = -2

Query: 439 PALNGKLTGMAXRVPVANVSVVDLTVXLGXLASYXXXXXXXXXXXEGPXKGILGYTEDQX 260
           P LNGKLTGMA RVP  +VSVVDLT  L   AS            +GP KGIL YTEDQ 
Sbjct: 228 PELNGKLTGMAFRVPTPDVSVVDLTARLEKPASLDDIKKVIKAAADGPMKGILAYTEDQV 287

Query: 259 VSSDFIGDSHSSIXDAAAGXSXNDNFXKLISWYDNEYGYSSRVIDLIKXIQSK 101
           VS+DF+ D++SSI DA A  S N +F KL+SWYDNE+GYS+RV+DLI  I +K
Sbjct: 288 VSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIATK 340


>U97405-3|AAB53008.1|  192|Caenorhabditis elegans Hypothetical
           protein T09B4.6 protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 308 CLLDLLLXGFIACXXSKTNS*IXNRYISXR 397
           CL+ L L GFI C   K++S   ++ IS R
Sbjct: 138 CLIALFLIGFITCEFIKSSSKTHSQLISPR 167


>AF026209-11|AAB71282.1|  353|Caenorhabditis elegans Seven tm
           receptor protein 262 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 263 LIFSIPENALXRTFSCLLDLLLXGFIACXXS 355
           LI +  E+    T SCL+DLL  GF     S
Sbjct: 72  LIVNWKESIFPATMSCLMDLLFVGFFGTSMS 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,851,232
Number of Sequences: 27780
Number of extensions: 88245
Number of successful extensions: 171
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)