Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10e14
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025723-5|AAK29936.2|  183|Caenorhabditis elegans Hypothetical ...    93   2e-19
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    35   0.049
Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical p...    35   0.065
Z81536-5|CAB04366.1|  297|Caenorhabditis elegans Hypothetical pr...    31   0.80 
AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine re...    30   1.9  
U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin pr...    27   9.9  

>AC025723-5|AAK29936.2|  183|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.5 protein.
          Length = 183

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 44/123 (35%), Positives = 66/123 (53%)
 Frame = -1

Query: 701 KYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCLAEFNQYSNCLDKSS 522
           K+CE   NE+ML R+E  DPR  + EG A+TAC + F + +K++CL +  + + C+D+SS
Sbjct: 37  KHCEKEANEFMLRRKEAEDPRAVLKEGAALTACGVNFLQSLKRSCLPQTQKLAECVDQSS 96

Query: 521 GDYAFRHCRKTQGVFDQCMLEKLNLPRPGFGYFCEARVHDTKRPKPLPEPKAVYPDATPA 342
                  C   Q   D C+   LNL RP  GYF +  V+D+    P  + +    +A   
Sbjct: 97  AKLYMSKCHDDQKELDACVEANLNLTRPKLGYFSKLHVYDSATAAPEVKLRDYKAEAAKV 156

Query: 341 LPE 333
           L E
Sbjct: 157 LNE 159


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 37/140 (26%), Positives = 54/140 (38%), Gaps = 8/140 (5%)
 Frame = -1

Query: 704 GKYC-ETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCLAEFNQYSNCLDK 528
           G  C  TI + Y+L    E      +N+ + + A T     K  K    +F   +  L+K
Sbjct: 239 GPVCYRTIRHRYLLGADFEEHDVDSVNDCRCLCAATYLPNNKKNKCMSFQFRNKTCTLNK 298

Query: 527 SS--GDYAFRHCRKTQGVFDQC----MLEKLNLPRPGFG-YFCEARVHDTKRPKPLPEPK 369
            +  G Y     RKT   +  C    +LE  +   P F     E +  DTK+  P  +PK
Sbjct: 299 GNHLGQYDLIEQRKTLYQYVGCDPEILLETASSKCPNFKPKSAEKKKPDTKKETPTKKPK 358

Query: 368 AVYPDATPALPEDAEKKPPR 309
                A     E  E K P+
Sbjct: 359 VELVTAKTVEGEKKETKKPK 378


>Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical
           protein F40D4.7 protein.
          Length = 295

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 674 YMLCRQEENDPRKCINEGKAVTACTLEFFRKVK 576
           Y++C  + N P  C+N G A+ +C  ++FR +K
Sbjct: 146 YVICNYQLNVPYNCVNVGCAMNSCFRQYFRPLK 178


>Z81536-5|CAB04366.1|  297|Caenorhabditis elegans Hypothetical
           protein F40D4.6 protein.
          Length = 297

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 674 YMLCRQEENDPRKCINEGKAVTACTLEFFRKVK 576
           Y++C  + N P  C+N G A+ +C  ++F   K
Sbjct: 149 YVICNYKLNIPYNCVNIGCAINSCYRQYFLSSK 181


>AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 23 protein.
          Length = 293

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 674 YMLCRQEENDPRKCINEGKAVTACTLEFFRKVK 576
           Y  C  E   PR C+  G ++ AC+  F+ K K
Sbjct: 146 YYFCNFELTFPRNCLTIGCSINACSSRFWTKSK 178


>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical protein
            ZK430.1 protein.
          Length = 1650

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 572  TCLAE-FNQYSNCLDKSSGDYAFRHCRKTQGVFDQCMLEKLNLP 444
            TC+   ++Q+++ + +S+GD   R+CR      D   L  LN P
Sbjct: 1226 TCIQRVYDQFASFVVESTGDVIIRYCRLIARFGDPSELLALNQP 1269


>U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin
           protein 2, isoform b protein.
          Length = 639

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 392 PKPLPEPKAVYPDATPALPEDAEKKPPR 309
           PK  PEPK + P   PA+P+      P+
Sbjct: 273 PKKEPEPKKMAPKIPPAVPKSLVSPEPK 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,899,029
Number of Sequences: 27780
Number of extensions: 298430
Number of successful extensions: 952
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)