Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10e12
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    43   3e-05
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    31   0.14 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   2.3  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   5.4  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   5.4  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    25   7.2  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   7.2  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   7.2  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    25   9.5  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
 Frame = -1

Query: 626 KPIIAAVNGFALGGGCELAMLCDIIYAGEKAKFGQPEINIGTIPGAGGT---QRLPRYVG 456
           KP++A +NG  +GGG  LAM      A E   F  PE  IG       +    RLP Y G
Sbjct: 153 KPVVALMNGITMGGGSGLAMHVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLPGYFG 212

Query: 455 KSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVEKLLEETIKLAE 327
                 + LT      ++  + G+ +   P         +LAE
Sbjct: 213 ----TYLGLTSQIVKGYDCLRTGIATHFVPKHMFPHLEDRLAE 251


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 538 RRNSVSPRSTLAPSPEPEAPSVFPDTLASRK 446
           RR+S S RS +    EPE PS+  + +AS K
Sbjct: 10  RRSSTSKRSVIDDDSEPELPSMTKEAIASHK 40


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 544 AKRRNSVSPRSTLAPSPEPEAPSVFP 467
           AK +  V+P    AP  EP  PS+ P
Sbjct: 290 AKSKKKVTPAPAPAPESEPSKPSIAP 315


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = -2

Query: 574 WQCCAISSMPAKRRNSVSPRSTLAPSPEPEAPSVFPDTLASRKQWRSC*QETSLMLMKPR 395
           +Q  + S  P   RN++ P +T        +PSV P+T+ S +         S   +K +
Sbjct: 357 FQSSSNSPAPYVYRNNLPPSATSFQPSSSRSPSVDPNTVKSAQHIPRMSPSPSASALKTQ 416

Query: 394 KWVLSVK 374
             V S K
Sbjct: 417 SHVPSAK 423


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 559 SHSIASSQPPPRAKPLTAAMMGFPQLEMSS 648
           S+S  SS   P A+PLTA  +GF   +  S
Sbjct: 268 SNSAQSSLFSPTARPLTARKLGFASSQTKS 297


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 547 PAKRRNSVSPRSTLAPSPEPEAP 479
           P K +N++  +  L PSPE +AP
Sbjct: 154 PGKEKNTLDLKHCLLPSPEYKAP 176


>SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 123

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 1  DFARFFLSIYKSYKQYYTSHLIS 69
          D     +S+YKSYK Y T+ ++S
Sbjct: 27 DVTMINISLYKSYKSYPTNKVLS 49


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
 Frame = -1

Query: 605 NGF-ALG---GGC---ELAMLCDIIYAGEKAKFGQPEINIGTIPGAGGTQRLPRYV 459
           NGF ALG   GG     LA  CD          G P   I TIPG   T  + + V
Sbjct: 98  NGFYALGLSQGGLFLRALAQTCDAAKIRSLITLGSPHSGINTIPGCSPTNLICKAV 153


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 550 MPAKRRNSVSPRSTLAPSPEPEAPSVFPD 464
           +P+  R+S+SP   L+P  +P     F D
Sbjct: 527 IPSSERSSISPSKPLSPELKPLLNEAFQD 555


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 519 RDQHWHHPRSRRHPASSQIRWQVESNGDRV 430
           RD  +   RSR+    ++ R++ E NGD+V
Sbjct: 56  RDSEYFRGRSRKFQIQAEGRFKKEYNGDQV 85


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 230 KSTFYGTFATEDRKEGMTAFVE-KRP 156
           +S FY T+  +++K GMT   E +RP
Sbjct: 841 RSIFYRTYTDQEKKIGMTVMEEFERP 866


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,356
Number of Sequences: 5004
Number of extensions: 68336
Number of successful extensions: 196
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)