Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10e09
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   1.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   1.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.6  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   8.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   8.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.8  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 611 ILKQPVSVTIGKKCL*YLYWQKPV 682
           +L+ P   +IG KCL YL++ K +
Sbjct: 385 LLRLPAIRSIGLKCLEYLFFFKMI 408


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 611 ILKQPVSVTIGKKCL*YLYWQKPV 682
           +L+ P   +IG KCL YL++ K +
Sbjct: 385 LLRLPAIRSIGLKCLEYLFFFKMI 408


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 325 VENFKINLYLNLK 363
           VENFK  +YL LK
Sbjct: 478 VENFKGGMYLRLK 490


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 325 VENFKINLYLNLK 363
           VENFK  +YL LK
Sbjct: 478 VENFKGGMYLRLK 490


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 430 YDIISINLIG*PIVVPIF 377
           Y+II+I  I  P+ VPI+
Sbjct: 325 YNIINIEQIPVPVPVPIY 342


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 430 YDIISINLIG*PIVVPIF 377
           Y+II+I  I  P+ VPI+
Sbjct: 336 YNIINIEQIPVPVPVPIY 353


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 430 YDIISINLIG*PIVVPIF 377
           Y+II+I  I  P+ VPI+
Sbjct: 354 YNIINIEQIPVPVPVPIY 371


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 430 YDIISINLIG*PIVVPIF 377
           Y+II+I  I  P+ VPI+
Sbjct: 356 YNIINIEQIPVPVPVPIY 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,893
Number of Sequences: 438
Number of extensions: 3855
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)