Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10e05
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...   197   1e-51
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...   160   2e-40
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    34   0.017
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    29   0.48 
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    26   6.0  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   6.0  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   7.9  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   7.9  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score =  197 bits (480), Expect = 1e-51
 Identities = 88/161 (54%), Positives = 121/161 (75%), Gaps = 1/161 (0%)
 Frame = -1

Query: 681 VMLAQSFXKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYGARLVQEI 502
           ++L QSF KNMGLYGERAG  + L  D   AA++ SQ KI++R +YSNPP+ GAR+   I
Sbjct: 276 MLLCQSFAKNMGLYGERAGCFSILANDAEEAARIESQTKILIRALYSNPPVNGARIANHI 335

Query: 501 LTNAELKKQWLGDVKQMADRIITMRSQLRAGIE-GAGNPHPWQHITDQIGMFCFTGLKPE 325
           L+N  L++QW G+V  M++R+ +MR  LR  +E    N H W+HITDQIGMFC+TGL P+
Sbjct: 336 LSNPALREQWAGEVVGMSERLKSMRKALRNILEKDLKNKHSWKHITDQIGMFCYTGLNPQ 395

Query: 324 QVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAIHKVTS 202
           QV+ L K++H+YLTK+GRIS++G+++ NV Y AEAI+ VTS
Sbjct: 396 QVDVLAKQYHIYLTKNGRISISGLNTSNVRYFAEAINAVTS 436


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score =  160 bits (389), Expect = 2e-40
 Identities = 75/162 (46%), Positives = 105/162 (64%)
 Frame = -1

Query: 699 VKEGHQVMLAQSFXKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYGA 520
           VK      + QSF KNMGLYGER G + ++  D +T  KV+SQ+ I+ R   SNPP YGA
Sbjct: 241 VKYNKDFFVCQSFAKNMGLYGERTGCMHYVAKDASTKNKVLSQLCIVQRNTISNPPAYGA 300

Query: 519 RLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCFT 340
           R+  EIL + +L  +W  D+K M+ RII MR +LR  +     P  W HIT QIGMF FT
Sbjct: 301 RIAAEILNSPQLFAEWEQDLKTMSSRIIEMRKRLRDSLVALKTPGSWDHITQQIGMFSFT 360

Query: 339 GLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAIH 214
           GL P QV+   + +H+Y + +GRIS+AG+++ NV ++A+A +
Sbjct: 361 GLTPAQVQFCQERYHLYFSANGRISMAGLNNSNVEHVAQAFN 402


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
 Frame = -3

Query: 520 PPRAGDTHQRRTQ-KAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRHVLL 344
           P  + D+HQ R+  ++  R R +      H +  +  R+    +  P ++ H   R    
Sbjct: 133 PHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRRRYE 192

Query: 343 HRTQARAGRASDERVPRVPDERRTHFRRRHLLAKRE 236
            R+ +R+ RA D     + D+ R+H R+R     RE
Sbjct: 193 ERS-SRSSRAHDYDYEDLRDDDRSHERKRSRSRPRE 227



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 445 PDHHDAEPAPRRHRGRRQPAP-LATHHRPDRHVLLHRTQARAGRASDERVP 296
           P HH    +PR   G R P+P  +      R  +  R + R+ R+S  R P
Sbjct: 113 PRHHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHP 163


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = -1

Query: 699 VKEGHQVMLAQSFXKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPL--- 529
           +KEG    + ++F  N+           FL  D   A+ ++       R     P L   
Sbjct: 330 LKEGLNSTVKKTFFDNLNSEKVCPSVSPFLTPDNI-ASSILYSTASFSRSKPDRPRLNLS 388

Query: 528 YGARLVQEILTNAELKKQWLGDVKQMAD 445
              +L+Q  L   +LKKQ+ GD++ +AD
Sbjct: 389 LELKLMQNELNKGQLKKQFKGDLRNLAD 416


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -1

Query: 282 KDGRISVAGISSQNVNYIAEAI 217
           K+GRI+  G+S+ N++++ E I
Sbjct: 130 KEGRINKIGVSNYNIHHLEEII 151


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 135 EHSIYLKQ*LIKNPNLLKVFVNLF 64
           E  ++L Q L K+PN  K+F NL+
Sbjct: 524 ERVVFLLQELAKSPNTPKLFFNLY 547


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/62 (19%), Positives = 27/62 (43%)
 Frame = -3

Query: 409  HRGRRQPAPLATHHRPDRHVLLHRTQARAGRASDERVPRVPDERRTHFRRRHLLAKRELH 230
            ++    P P + H  P    L+H+++++  + +          R    +R   L  +EL+
Sbjct: 1253 NKREHHPKPFSLHQVPPPESLIHKSKSKFSKGNHHSTNGTQSIRGRGGKRGKPLRSKELN 1312

Query: 229  RR 224
            R+
Sbjct: 1313 RK 1314


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 448 GPDHHDAEPAPRRHRGRRQPAP 383
           G  H    P+PR  R RR P+P
Sbjct: 342 GSLHRSRSPSPRSGRPRRSPSP 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,160
Number of Sequences: 5004
Number of extensions: 45412
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)