Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10e05
(699 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39645-8|AAA80361.1| 414|Caenorhabditis elegans Hypothetical pr... 222 2e-58
AF003140-10|AAD47121.2| 419|Caenorhabditis elegans Hypothetical... 204 6e-53
U58726-4|AAB00578.1| 408|Caenorhabditis elegans Hypothetical pr... 148 4e-36
U58726-3|AAB00577.1| 357|Caenorhabditis elegans Hypothetical pr... 134 6e-32
U46671-1|AAA85747.1| 364|Caenorhabditis elegans Hypothetical pr... 118 4e-27
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 36 0.037
U56963-2|AAB38119.2| 326|Caenorhabditis elegans Neuropeptide-li... 32 0.45
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 32 0.45
Z72506-7|CAA96620.2| 293|Caenorhabditis elegans Hypothetical pr... 31 0.79
Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical pr... 31 0.79
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 31 1.0
Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical pr... 30 1.8
U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern... 29 2.4
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr... 29 3.2
U39853-2|AAK39225.1| 771|Caenorhabditis elegans Kinase suppress... 29 3.2
U38820-1|AAA92436.1| 771|Caenorhabditis elegans KSR-1 protein. 29 3.2
S80647-1|AAB35769.1| 771|Caenorhabditis elegans KSR-1 protein. 29 3.2
Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical pr... 29 4.2
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 29 4.2
AF125967-1|AAD14759.1| 271|Caenorhabditis elegans Hypothetical ... 28 5.6
U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical pr... 28 7.4
U40959-4|AAA81768.1| 112|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z83234-7|CAB76745.1| 667|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z82067-4|CAB76738.1| 667|Caenorhabditis elegans Hypothetical pr... 27 9.8
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 27 9.8
>U39645-8|AAA80361.1| 414|Caenorhabditis elegans Hypothetical
protein C14F11.1a protein.
Length = 414
Score = 222 bits (543), Expect = 2e-58
Identities = 102/165 (61%), Positives = 129/165 (78%)
Frame = -1
Query: 699 VKEGHQVMLAQSFXKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYGA 520
V++GH ++L+QSF KNMGLYGER GA + + D AA+V SQVKI++R +YSNPP++GA
Sbjct: 249 VEQGHNIVLSQSFAKNMGLYGERVGAFSVVTSDADEAARVASQVKILIRPLYSNPPVHGA 308
Query: 519 RLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCFT 340
R+ IL + L KQWLGDVK MADRIITMR+ L+ + G+ W+HIT+QIGMFCFT
Sbjct: 309 RIASRILADPALNKQWLGDVKLMADRIITMRTTLKDLLAKEGSTRNWEHITNQIGMFCFT 368
Query: 339 GLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAIHKVT 205
G+ P+QVE+L KE VYLTKDGRISVAGISS NV Y+A A+H+VT
Sbjct: 369 GINPQQVEKLIKEHSVYLTKDGRISVAGISSNNVAYLAHALHQVT 413
>AF003140-10|AAD47121.2| 419|Caenorhabditis elegans Hypothetical
protein C44E4.3 protein.
Length = 419
Score = 204 bits (497), Expect = 6e-53
Identities = 92/165 (55%), Positives = 125/165 (75%)
Frame = -1
Query: 699 VKEGHQVMLAQSFXKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYGA 520
+++GH V++AQSF KNMGLYGER GA + +C A +V SQ++I++R M S PPL+GA
Sbjct: 254 IEQGHNVLVAQSFAKNMGLYGERVGAFSIVCDSAEEAIRVGSQMRIIIRPMISMPPLHGA 313
Query: 519 RLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCFT 340
R+ IL+N ELKK WL DVK MADRI +MR+ L+ G++ G+ W HIT+QIGMFCFT
Sbjct: 314 RIASRILSNPELKKSWLEDVKLMADRIKSMRTALKDGLKAEGSTLNWDHITNQIGMFCFT 373
Query: 339 GLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAIHKVT 205
G+ +QV++L KE VYLT DGRIS++GI++ NV Y+A+A+H VT
Sbjct: 374 GINEKQVQKLIKEHSVYLTNDGRISISGINTGNVAYLAKALHDVT 418
>U58726-4|AAB00578.1| 408|Caenorhabditis elegans Hypothetical
protein T01C8.5 protein.
Length = 408
Score = 148 bits (358), Expect = 4e-36
Identities = 67/161 (41%), Positives = 103/161 (63%)
Frame = -1
Query: 699 VKEGHQVMLAQSFXKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYGA 520
V +G +++++QSF KN GLY ER G LT + + A A SQ+ +++R +SNPP +GA
Sbjct: 237 VDQGMEMVVSQSFAKNFGLYNERVGNLTVVVNNPAVIAGFQSQMSLVIRANWSNPPAHGA 296
Query: 519 RLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCFT 340
R+V ++LT ++QW ++ M+ RI MR+ L + G P W HI QIGMF +T
Sbjct: 297 RIVHKVLTTPARREQWNQSIQAMSSRIKQMRAALLRHLMDLGTPGTWDHIIQQIGMFSYT 356
Query: 339 GLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAI 217
GL QV+ L V+L +DGRI++ G++++NV Y+A+AI
Sbjct: 357 GLTSAQVDHLIANHKVFLLRDGRINICGLNTKNVEYVAKAI 397
>U58726-3|AAB00577.1| 357|Caenorhabditis elegans Hypothetical
protein T01C8.4 protein.
Length = 357
Score = 134 bits (324), Expect = 6e-32
Identities = 63/161 (39%), Positives = 98/161 (60%)
Frame = -1
Query: 699 VKEGHQVMLAQSFXKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYGA 520
V++G +++++QSF KN GLY +R G+LT + + A + SQ+ ++ +SNPP YGA
Sbjct: 189 VEQGLEMIVSQSFSKNFGLYNDRVGSLTVIVNKPSHIANLKSQLTLVNVSNFSNPPAYGA 248
Query: 519 RLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCFT 340
R+V EIL + + ++QW +K MA RI R +L + W IT Q G+F +T
Sbjct: 249 RIVHEILKSPKYREQWQNSIKMMAFRIKKTRQELIRELNMLQTSGKWDRITQQSGLFSYT 308
Query: 339 GLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAI 217
GL P QV+ L +YL DGRI++ G++ N++Y+A AI
Sbjct: 309 GLTPCQVDHLIAHHKIYLLSDGRINICGLNMSNLDYVARAI 349
>U46671-1|AAA85747.1| 364|Caenorhabditis elegans Hypothetical
protein C14E2.2 protein.
Length = 364
Score = 118 bits (284), Expect = 4e-27
Identities = 55/161 (34%), Positives = 94/161 (58%)
Frame = -1
Query: 699 VKEGHQVMLAQSFXKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPLYGA 520
V +G ++ +AQSF KN+ R G LT + + A + SQ+ + +R+ P +GA
Sbjct: 193 VSDGIELFVAQSFAKNLFFTNPRLGNLTVVVNNAAVIPGIKSQMSLAIRINAFYPTAFGA 252
Query: 519 RLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCFT 340
+V ++L+ + ++ W+ ++Q++ RI MR+ L + P W HI Q GMF +T
Sbjct: 253 TIVHKVLSTSARREFWIQSIQQISSRIKQMRTALFDVLSALKTPGSWDHIIRQTGMFSYT 312
Query: 339 GLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAI 217
GL QV+ L + V+L DGRI+++G++ +NV Y+A+AI
Sbjct: 313 GLTSTQVDHLVRNHKVFLLSDGRINISGLNMKNVEYVAKAI 353
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 35.5 bits (78), Expect = 0.037
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -3
Query: 538 PSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRG---RRQPAP 383
PSA + PP A + R++ ARRR++ P + PAPRR R R PAP
Sbjct: 351 PSASKSPPPAPKRAKSRSKSPPARRRRS---PSASKSPPAPRRRRSPSKSRSPAP 402
Score = 30.7 bits (66), Expect = 1.0
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
Frame = -3
Query: 556 PRHVLQPSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLA 377
PR PSA + PP A +RR + ++ + PAP R R R A +
Sbjct: 302 PRRRRSPSASKSPPPA----RRRRSPSQSKSPAPKRAKSRSKSPPAPARRR-RSPSASKS 356
Query: 376 THHRPDRHVLLHRT-QARAGRA-SDERVPRVPDERRTHFRRRHLLAKREL 233
P R ++ AR R+ S + P P RR+ + R KRE+
Sbjct: 357 PPPAPKRAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRSPAPKREI 406
>U56963-2|AAB38119.2| 326|Caenorhabditis elegans Neuropeptide-like
protein protein16 protein.
Length = 326
Score = 31.9 bits (69), Expect = 0.45
Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 1/108 (0%)
Frame = -3
Query: 514 RAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRHVLLHRT 335
R+ + H+ + + +KA P+ H A H G + + + H R V H
Sbjct: 110 RSTEHHRVKRSEGHPHEKKATHSPEGHIV--AKDDHHGHEKRSSDSHHGHQKRSVDEHHG 167
Query: 334 QARAGRASDERVPRVPDERRTHFRRRHLLAKRELHR-RGHPQGHLINR 194
+ A D + E H H KR GHP+ HL+ R
Sbjct: 168 HQKKN-AEDHHEHQKRSEHVEHQAEMHEHQKRSTQEVSGHPEHHLVKR 214
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -3
Query: 499 HQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRHVLLHRTQ 332
+Q++ Q+ ++ G P P +H+ QPA + H P +H H+TQ
Sbjct: 502 YQQQQQQHAQHQQNMSGYPQQQQQPQHPHQHQ---QPASVPMQHHPQQHPSQHQTQ 554
>Z72506-7|CAA96620.2| 293|Caenorhabditis elegans Hypothetical
protein F07A5.6 protein.
Length = 293
Score = 31.1 bits (67), Expect = 0.79
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -3
Query: 547 VLQPSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAP---RRHRGRRQPAP 383
+L+P+ RR P DTH RR+ P++ AP RR GR+ P P
Sbjct: 15 LLEPTCRRRLPMPPDTHLRRSSSPRILPTPPPLSPEYRCPSAAPHLERRPSGRQLPRP 72
>Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical
protein F40F8.5 protein.
Length = 420
Score = 31.1 bits (67), Expect = 0.79
Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Frame = -3
Query: 505 DTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRHVLLHRTQAR 326
DT T RRR D P+ + + HR RR P + H
Sbjct: 264 DTTIDHTGHNHRRRRSEDHDPNDPNVDHTGHNHRRRRD-----QDDDPSDTTIDHTGHNH 318
Query: 325 AGRASDERVPRVPDERRT--HFRRRHLLAKRELHRRGHPQGH 206
R SD+ P P+ T + +RRH++A R GH
Sbjct: 319 RRRRSDDHDPNDPNVDHTGHNHKRRHVIASRSRRTVCSTAGH 360
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = -3
Query: 538 PSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPD 359
PS RR R+ D R + R + P D PRR GRR P P + P+
Sbjct: 83 PSRERRRSRSRDRGAPRRRSRTRSRDRRRSPPRRRDRRTPPRRSPGRRSP-PRSRLPGPE 141
Query: 358 R 356
R
Sbjct: 142 R 142
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Frame = -3
Query: 526 RRPPRAGD--THQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRH 353
R PPR D T RR+ + R GP+ D P RH + T D+
Sbjct: 111 RSPPRRRDRRTPPRRSPGRRSPPRSRLPGPERRDVMPFNPRHSPPKNAKLELTAEERDQR 170
Query: 352 VLLHRTQARAGRASD 308
LL AR R D
Sbjct: 171 TLLIMQIARDTRPRD 185
>Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical
protein R08D7.1 protein.
Length = 458
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = -3
Query: 520 PPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRP 362
PPR + + A RR D HD++ +P R+R RR RP
Sbjct: 160 PPRPSRKIREESPSARNRRSPPRTRRDRHDSDNSPPRNRSRRDSDNSPPRRRP 212
>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn
(werner's syndrome) relatedprotein 1 protein.
Length = 1056
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = -1
Query: 486 LKKQWLGDVKQMADRIITMRSQLRAGIEGAGNPHPWQHITDQIGMFCFTGLKPEQVERL 310
LKKQ + + + D++ + +R GI P+Q +++ + + CF L+P L
Sbjct: 797 LKKQEVTGLPEKIDQLRSRLDDIRVGIANMHEVAPFQIVSNTV-LDCFANLRPTSASNL 854
>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical
protein C35C5.6 protein.
Length = 1224
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +1
Query: 271 ASVFRQVHVELFRQTLDLLGLESGEAEHAD--LVGDVLPGVRVAGALDAGAELAPHRDDP 444
AS ++ V+ LF+ TL+ G+E GE +G V ++ + A A HRD
Sbjct: 521 ASDYKIVYPVLFK-TLEGYGVELGEPHDIKNKKLGPVKLQIKSLHEIFTAANRAGHRDAA 579
Query: 445 VRHLLYV 465
+RHL ++
Sbjct: 580 IRHLCFL 586
>U39853-2|AAK39225.1| 771|Caenorhabditis elegans Kinase suppressor
of activatedras protein 1 protein.
Length = 771
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 579 MSQVKIMVRVMYSNPPLYGARLVQEILTNA 490
M Q ++ R YSN P +GA + Q+I T A
Sbjct: 1 MMQTQVASRAGYSNLPQFGAGIAQDIKTQA 30
>U38820-1|AAA92436.1| 771|Caenorhabditis elegans KSR-1 protein.
Length = 771
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 579 MSQVKIMVRVMYSNPPLYGARLVQEILTNA 490
M Q ++ R YSN P +GA + Q+I T A
Sbjct: 1 MMQTQVASRAGYSNLPQFGAGIAQDIKTQA 30
>S80647-1|AAB35769.1| 771|Caenorhabditis elegans KSR-1 protein.
Length = 771
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 579 MSQVKIMVRVMYSNPPLYGARLVQEILTNA 490
M Q ++ R YSN P +GA + Q+I T A
Sbjct: 1 MMQTQVASRAGYSNLPQFGAGIAQDIKTQA 30
>Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 469 RRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRHV 350
+RR D PD DA + ++ R PAPL TH + HV
Sbjct: 782 KRRVCDTRPDCLDA--SDEQNCADRAPAPLPTHSQQHHHV 819
>Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 469 RRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRHV 350
+RR D PD DA + ++ R PAPL TH + HV
Sbjct: 782 KRRVCDTRPDCLDA--SDEQNCADRAPAPLPTHSQQHHHV 819
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 28.7 bits (61), Expect = 4.2
Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 2/110 (1%)
Frame = -3
Query: 538 PSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPD 359
P R P RA R ++ + R+++ P P+P R R R +P+ P
Sbjct: 77 PKRKREPIRAPSASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRR-RISRSPVRRSRSPP 135
Query: 358 RHVLLHRTQARAGRASDERVPRVPDERRTHFRRRHLLAK--RELHRRGHP 215
R + R R P RR R + + R+ R G P
Sbjct: 136 RRQVSRSRSPPPRRQQRSRSPPPAKRRRDQSRSKSPPRRNYRQRQRSGSP 185
>AF125967-1|AAD14759.1| 271|Caenorhabditis elegans Hypothetical
protein Y49G5B.1 protein.
Length = 271
Score = 28.3 bits (60), Expect = 5.6
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Frame = -3
Query: 556 PRHVLQPSAVRRPPRAGDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLA 377
P+HVL PSA ++ PR G D+ + E R + ++ + +A
Sbjct: 146 PKHVLFPSADKQDPRVAGVEDEEDDLVPV------GFADYEEVEEKRRTTKHHKEASTVA 199
Query: 376 THHRPDRHVLLHRTQARAGRAS-----DER---VPRVPDERR 275
PD L H T++ RA DE + RVP++R+
Sbjct: 200 P-TTPDGVELPHDTESNVVRADVIDDMDENRRPMSRVPEDRK 240
>U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical
protein F27C1.6 protein.
Length = 647
Score = 27.9 bits (59), Expect = 7.4
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Frame = -1
Query: 531 LYGARLVQEILTNAELKKQWLGDVKQMADRIITM-RSQLRAGIEGAGNPHPWQHITDQIG 355
++G + +LT E++ D+K DR+ M R + GI+ A N + + I + G
Sbjct: 149 MWGDEKTEPVLTEKEMELMKATDIKMAKDRLSQMQRMRAIVGIQEAKNRY-MKKIKSK-G 206
Query: 354 MFCFTGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAE 223
LK E+ ++L KEF + +D + ++ ++ I E
Sbjct: 207 YHRI--LKREKRKQLLKEFDDLVARDPSAAHEKLAEMDLQRIME 248
>U40959-4|AAA81768.1| 112|Caenorhabditis elegans Hypothetical
protein B0310.4 protein.
Length = 112
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Frame = -3
Query: 508 GDTHQRRTQKAMARRRKADGGPDHHDAEPAPRRHRG--RRQPAPLATHHRPDRH-VLLHR 338
G+TH+ T + R K G H HRG R HR + H HR
Sbjct: 18 GETHRGETHRGETHRGKTHRGETHRGETHRGETHRGETHRGETHRGKTHRGETHRGETHR 77
Query: 337 TQARAG 320
+ R G
Sbjct: 78 GETRRG 83
>Z83234-7|CAB76745.1| 667|Caenorhabditis elegans Hypothetical
protein W03H9.4 protein.
Length = 667
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 447 DRIITMRSQLRAGIEG-AGNPHPWQHITDQIGMF 349
D ++ + Q+ A I G +GN WQ + DQ+ +F
Sbjct: 304 DELLKLEDQMDAKIRGNSGNKGYWQDLDDQLKVF 337
>Z82067-4|CAB76738.1| 667|Caenorhabditis elegans Hypothetical
protein W03H9.4 protein.
Length = 667
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 447 DRIITMRSQLRAGIEG-AGNPHPWQHITDQIGMF 349
D ++ + Q+ A I G +GN WQ + DQ+ +F
Sbjct: 304 DELLKLEDQMDAKIRGNSGNKGYWQDLDDQLKVF 337
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 482 LSSALVSISCTRRAPYSGGLEYMTRTMILTCDIT 583
LSS S+SC YS L+Y T + C +T
Sbjct: 502 LSSKSYSMSCPSGLQYSASLKYCTTSTASGCSVT 535
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,689,796
Number of Sequences: 27780
Number of extensions: 277302
Number of successful extensions: 1054
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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