Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10e04
(241 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 29 0.062
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 27 0.44
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 1.0
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 25 1.8
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 24 2.3
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 24 2.3
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 24 3.1
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 23 5.4
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p... 23 5.4
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 23 5.4
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 23 7.1
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 23 7.1
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 22 9.4
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 22 9.4
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 22 9.4
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.062
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -3
Query: 209 WQIVFLITVSFQFITNAVFVIFVKGSVQPWNF-HDEERIGTGVEELKSLNDHKNSIKEK 36
WQ +FLI F+ V + + SV+ NF DEE+ + +++ ND ++I EK
Sbjct: 219 WQYLFLIEGGVTFLCAIVIFLVLPVSVETANFLTDEEKT---LAKMRIENDSSSAISEK 274
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 26.6 bits (56), Expect = 0.44
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -3
Query: 200 VFLITVSFQFITNAVFVIFVKGSVQPWNFHDEERIGTGVEELKSLNDHKNSIKEK 36
VFL + F+ A + K SV+ +E +E KS ++HK K+K
Sbjct: 32 VFLHIFTLTFLFKAFLLKMAKRSVEELKRSADEEASVKRKEKKSKHEHKKHKKDK 86
Score = 24.2 bits (50), Expect = 2.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 86 VEELKSLNDHKNSIKEKEK 30
VEELK D + S+K KEK
Sbjct: 55 VEELKRSADEEASVKRKEK 73
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.4 bits (53), Expect = 1.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 227 LKNPSRWQIVFLITVSFQFITNAVFVIFVKGSVQPWNFHDEERIGT 90
LK+PS W ++ +S F N I ++ S+Q NF ++ R T
Sbjct: 855 LKHPSEWGVLQHTFISSNFFENVPCYISLEQSLQ--NFQNDIRPDT 898
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 236 KDDLKNPSRWQIVFLITVSFQ--FITNAVFV 150
+DD +NP W + + V+F F+T AV++
Sbjct: 68 EDDPENPKNWPLWAKLVVTFDVCFLTFAVYM 98
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 24.2 bits (50), Expect = 2.3
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 169 MNWKDTVMRNTICHLLGFF 225
+NWK ICH L FF
Sbjct: 182 LNWKRLYQVQNICHKLQFF 200
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 24.2 bits (50), Expect = 2.3
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 143 VKGSVQPW-NFHDEERIGTGVEELKSLNDHKNSIKEKEKL 27
VK QP DE++I + ++L++++D K+ + EKL
Sbjct: 510 VKQVAQPTAEVSDEKKIRSLCKKLRAIDDLKSRLNNNEKL 549
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 115 KFHGCTDPFTNITKTAL 165
KF+G D F N+ +TAL
Sbjct: 204 KFNGSLDAFRNVIRTAL 220
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 117 VPWLHRPFHEYHED 158
VPW + P E HED
Sbjct: 37 VPWYNIPLPELHED 50
>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 506
Score = 23.0 bits (47), Expect = 5.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +3
Query: 87 TCTDSFFVVKVPWLHRP 137
TC +VK+ WL+ P
Sbjct: 68 TCVSCKLIVKIDWLNEP 84
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 23.0 bits (47), Expect = 5.4
Identities = 7/21 (33%), Positives = 16/21 (76%)
Frame = -2
Query: 228 FEKSEQMANSVPHNRVLPVHN 166
+E+S+ + +S+P +LPV++
Sbjct: 740 YERSKMLGDSIPELVILPVYS 760
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -2
Query: 63 RPQKQHQRKGEIRK 22
R QK+H+R+ E+RK
Sbjct: 335 RAQKKHEREEELRK 348
>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 462
Score = 22.6 bits (46), Expect = 7.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 74 LILLHLYRFFLRRESSMAAPTLSRISRRQH 163
LIL+ + SSM AP L +I+ R H
Sbjct: 48 LILVSAFALLGPMASSMVAPCLDQIADRFH 77
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -1
Query: 133 RCSHGTFTTKKESVQ 89
+CSH TFT + S++
Sbjct: 695 KCSHSTFTMRPLSIE 709
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 22.2 bits (45), Expect = 9.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 79 SSTPVPILSSS*KFHGCTDPFTNITKT 159
SSTPV + SSS G + T I T
Sbjct: 275 SSTPVSLTSSSTSSSGSSQDSTTIDST 301
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -2
Query: 174 VHNQCCLRDIRER 136
+H + CL+D+RER
Sbjct: 611 IHLERCLKDLRER 623
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 821,123
Number of Sequences: 5004
Number of extensions: 12177
Number of successful extensions: 49
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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