Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10e04
(241 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0540 + 3957622-3960903 28 0.92
04_01_0067 - 673381-673387,675388-678131 28 1.2
02_02_0285 + 8582033-8582201,8582375-8582652,8582762-8583394 28 1.2
12_01_0913 + 8882193-8883510,8887633-8887865,8889619-8889871,889... 26 4.9
11_04_0443 - 17808897-17809110,17809169-17813652 25 6.5
05_01_0173 - 1199668-1199685,1199907-1199969,1200277-1200379,120... 25 6.5
02_02_0322 - 8938101-8938149,8938235-8938458,8938545-8938605,893... 25 6.5
11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752,171... 25 8.5
07_01_0705 - 5313315-5315219,5315858-5315860 25 8.5
06_03_0306 - 19396423-19397112,19397645-19397916,19398047-19398215 25 8.5
01_06_1483 + 37683559-37683922,37684916-37685193,37685865-37686167 25 8.5
>01_01_0540 + 3957622-3960903
Length = 1093
Score = 28.3 bits (60), Expect = 0.92
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 118 FHGCTDPFTNITKTALVMNWKDTVMRNTICHLLGFFKS 231
F G D FT+ A+V NW+ + +C LG F++
Sbjct: 322 FCGILDRFTSEDVLAVVPNWRCNTTDDALCRRLGPFET 359
>04_01_0067 - 673381-673387,675388-678131
Length = 916
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = -3
Query: 152 VIFVKGSVQPWNFHDEERIGTGVEELKSLNDHKNSIKEK 36
++ ++GSV+ FH ++ +G +EELK L D + +K K
Sbjct: 679 LVNLQGSVE---FHVKKGVGCTLEELKGLKDLRGKLKIK 714
>02_02_0285 + 8582033-8582201,8582375-8582652,8582762-8583394
Length = 359
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 131 VQPWNFHDEERIGTGVEELKSLNDHKN 51
++PW+ D RIGTG +E HK+
Sbjct: 50 LEPWDLKDRCRIGTGAQEEWYFFSHKD 76
>12_01_0913 +
8882193-8883510,8887633-8887865,8889619-8889871,
8891281-8891470,8891641-8891773,8891797-8891886
Length = 738
Score = 25.8 bits (54), Expect = 4.9
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -3
Query: 236 KDDLKNPSRWQIVFLITVSFQFITNAVFVIF--VKGSVQPWNFHDEERIG-TGVEELKSL 66
K ++ P W++ +ITV+ + VFV+ VK + G T ++ +
Sbjct: 436 KSEIGRPPHWKLPVVITVAVVLVIIVVFVLVWAVKRKPREGGIRRSVSPGITSIDRVTLQ 495
Query: 65 NDHKNSIKEK 36
N +N KEK
Sbjct: 496 NATENFAKEK 505
>11_04_0443 - 17808897-17809110,17809169-17813652
Length = 1565
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 115 KFHGCTDPFTNITKTALVMNWK 180
KFH C+D + I + NWK
Sbjct: 1203 KFHSCSDTISRIYMYLMDCNWK 1224
>05_01_0173 -
1199668-1199685,1199907-1199969,1200277-1200379,
1201408-1201514
Length = 96
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 146 FVKGSVQPWNFHDEERIGTGVEELKSLNDH 57
F KG PW+ HD+ G G E L DH
Sbjct: 68 FKKGMRHPWDGHDDHSHGHGHEHEAPL-DH 96
>02_02_0322 -
8938101-8938149,8938235-8938458,8938545-8938605,
8938724-8940761,8940797-8940908,8942037-8942047,
8942293-8942443
Length = 881
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 207 ANSVPHNRVLPVHN 166
ANS PH RVLP+++
Sbjct: 556 ANSAPHERVLPLYS 569
>11_01_0219 -
1710206-1710246,1710479-1710620,1710699-1710752,
1710838-1710909,1711631-1711699,1711807-1711848,
1711946-1712014,1712130-1712267,1712390-1712500,
1712576-1712726,1713720-1713775,1714076-1714753
Length = 540
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Frame = -3
Query: 110 DEERIGTGVEELKSLND----HKNSIKEKEKLG 24
+EE G G EEL+ L+D ++ +EKE+LG
Sbjct: 122 EEEEDGEGDEELEELDDVDDEEESEEEEKEELG 154
>07_01_0705 - 5313315-5315219,5315858-5315860
Length = 635
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 116 FHDEERIGTGVEELKSLND 60
FHD++R GVE L SL D
Sbjct: 578 FHDKKRSLEGVEHLTSLKD 596
>06_03_0306 - 19396423-19397112,19397645-19397916,19398047-19398215
Length = 376
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 131 VQPWNFHDEERIGTGVEELKSLNDHKN 51
++PW+ D RIGTG + HK+
Sbjct: 50 LEPWDLKDRCRIGTGPQNEWYFFSHKD 76
>01_06_1483 + 37683559-37683922,37684916-37685193,37685865-37686167
Length = 314
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +1
Query: 124 GCTDPFTNITKTALVMNWKDTVMRNTICHLLGFFK 228
G D I K V+NW V CH+L +K
Sbjct: 230 GFRDYNRKIVKLEWVLNWTTFVSARVACHILITYK 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,080,272
Number of Sequences: 37544
Number of extensions: 70776
Number of successful extensions: 214
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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