Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10e04
         (241 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   2.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   6.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      19   6.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             19   6.4  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    19   8.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    19   8.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    19   8.5  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 2.8
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -3

Query: 179 FQFITNAVFVIFVKGSVQPWNFHDEERIGTGVEELKSLNDHKNSIKEKEK 30
           F  + N  FV     +V  W+F +   I    +E+ S N    + KEK K
Sbjct: 97  FTALGNFYFVHESLKNVLLWDFQECTFISVNGKEVHSGNIEAVTTKEKAK 146


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 189 NRVLPVHNQCCLRDIRER 136
           N  LP H     RD R+R
Sbjct: 259 NLYLPFHLTLSFRDFRDR 276


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 77  LKSLNDHKNSIKEKEK 30
           L SLN+HK+    ++K
Sbjct: 414 LNSLNNHKSIYHRRQK 429


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 189 NRVLPVHNQCCLRDIRER 136
           N  LP H     RD R+R
Sbjct: 254 NLYLPFHLTLSFRDFRDR 271


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 172 NWKDTVMRNTICHLLGFFK 228
           NWK    ++ I  ++GF K
Sbjct: 10  NWKMNGTKSEINDIVGFLK 28


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 84  YTCTDSFFVVKVPWLHRPFHEY 149
           +TC +  FV+K    +  FH Y
Sbjct: 231 FTCLEVVFVLKRRLGYYLFHTY 252


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 99  SFFVVKVPWLHRPFHEYHE 155
           +F  V + ++H P H Y E
Sbjct: 366 NFGHVAISYIHDPDHRYLE 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,593
Number of Sequences: 438
Number of extensions: 808
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4024224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)