Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10e03
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 106 3e-24
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 88 1e-18
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 30 0.36
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 29 0.62
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac... 27 2.5
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S... 27 2.5
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 27 3.3
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 27 3.3
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 26 4.4
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 26 4.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 4.4
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 26 5.8
SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual 25 7.7
>SPAC637.08 |||iron-sulfur cluster assembly ATPase
Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 106 bits (254), Expect = 3e-24
Identities = 60/154 (38%), Positives = 87/154 (56%), Gaps = 6/154 (3%)
Frame = -2
Query: 674 RHVAWGPLDCLVVDTPPGTGDTHLSLAQ---NLPLDGAIVVTTPQSAALQVTKRGINMFE 504
+ V W LD L+VDTPPGT D HLSL Q N +DGA+VVTTPQ ALQ ++ I+
Sbjct: 164 KDVNWENLDYLIVDTPPGTSDEHLSLVQFFKNSGIDGAVVVTTPQEVALQDVRKEIDFCR 223
Query: 503 KLKVPIIGIVENMSHAICSQCGTKNFIFGNDT---KKSAADMGLEIIESFEVDQNMSDCI 333
K +PI+G+VENMS +C C K+ IF T + A +MGL + +D ++
Sbjct: 224 KASIPILGLVENMSGFVCPSCKGKSNIFTITTGGGEALAKEMGLPFLGKIPLDPLIARSC 283
Query: 332 NSGKPAIYALPDSIHAEKYRHLANKVFKYIDDKE 231
+ GK I P+S +E + NK+ + + ++
Sbjct: 284 DFGKSFIDECPESPASEIIIDIINKIDESLQKRQ 317
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 87.8 bits (208), Expect = 1e-18
Identities = 47/128 (36%), Positives = 71/128 (55%), Gaps = 11/128 (8%)
Frame = -2
Query: 668 VAWGPLDCLVVDTPPGTGDTHLSLAQNL----------PLDGAIVVTTPQSAALQVTKRG 519
V+WG LD L++DTPPGTGD HL++ ++L P+DGA++VTTPQ A ++
Sbjct: 119 VSWGELDFLIIDTPPGTGDEHLTIVESLLSETSTVRDVPIDGAVIVTTPQGIATLDVQKE 178
Query: 518 INMFEKLKVPIIGIVENMSHAICSQCGTKNFIFGNDTKKSAAD-MGLEIIESFEVDQNMS 342
I+ +K + I+GIVENMS IC C IF + + ++ L + S +D
Sbjct: 179 IDFCKKASIKILGIVENMSGYICPHCADCTNIFSSGGGLTLSEKYKLPFLGSVPIDPKFG 238
Query: 341 DCINSGKP 318
+ I + P
Sbjct: 239 EMIENLTP 246
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 29.9 bits (64), Expect = 0.36
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -2
Query: 629 PPGTGDTHLS-LAQNLPLDGAIVVTTPQSAALQVTKRGINMFEKLKVPIIGIVENMSHAI 453
PPG ++ L NL L G + ++ Q+ L V ++ L++ ++G++ + S
Sbjct: 309 PPGLRFPAVNILGDNLILSGIYLTSSRQAFVLWVYSLDKELW--LQLDMLGVLNHGSWFK 366
Query: 452 CS--QCGTKNFIFGNDTKKSAADMGL 381
C C + +FGN T+K D L
Sbjct: 367 CLVLDCTNRFVVFGNKTRKLTQDYNL 392
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 29.1 bits (62), Expect = 0.62
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -2
Query: 416 NDTKKSAADMGLEIIESFEVDQNMSDCINSGKPAIYALPDSIHAEKY 276
N ++ + M LE + F+V++N++DCI P++ + P I + Y
Sbjct: 1811 NFSELKSGKMKLEPDKVFDVEENIADCIELVYPSLSSKPVQISYDIY 1857
>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 27.1 bits (57), Expect = 2.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 482 GIVENMSHAICSQCGTKNF 426
G+ N SH IC +CG ++F
Sbjct: 9 GMRHNKSHTICRRCGKRSF 27
>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 91
Score = 27.1 bits (57), Expect = 2.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 482 GIVENMSHAICSQCGTKNF 426
G+ N SH IC +CG ++F
Sbjct: 9 GMRHNKSHTICRRCGKRSF 27
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 243 YIFKNFISKVSVFLCVYAVWEGVNRWL 323
YIF +FIS+ + + + A+W+ + +L
Sbjct: 282 YIFASFISRDTTYQLIIAIWKNTHPFL 308
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/63 (20%), Positives = 27/63 (42%)
Frame = +3
Query: 225 VVFLIIYIFKNFISKVSVFLCVYAVWEGVNRWLPAVYTI*HILIYFKTFNNLKTHICSRF 404
+ FL ++++ F + Y W N+W + +I YF ++ TH+ +
Sbjct: 2 ITFLEVFVYFYFFPLLVFITLQYPRWT-FNKWKALLPVSAYISFYFIIISSFSTHLNILY 60
Query: 405 FGI 413
F +
Sbjct: 61 FNL 63
>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 26.2 bits (55), Expect = 4.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 474 RKHVARHLFSMWNKKFYFW 418
R H++ HLF++W Y W
Sbjct: 172 RVHLSYHLFALWVINLYIW 190
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = -2
Query: 308 ALPDSIHAEKYRHLANKVFKYIDDKENHRAKAKEQ*DYMGTFT*YIQLYFKNYTKYI 138
A D K+R +ANK + K N + + Q Y+ T + +F+ Y++++
Sbjct: 161 AFVDVFPIRKHRLIANKNYYLFLFKFNRKLALELQRAYINTMNWFYLYHFEQYSRFL 217
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -1
Query: 672 TRGVGST*LSRCRYAAWYRRYTFITCAKLAFRWSNSSNN 556
T GV + L + R + +Y+RY F+ +L+ W + N+
Sbjct: 2225 TDGVFTKLLRKTRDSCYYKRYMFVFDDELSPEWVEAMNS 2263
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 492 SYYRYCRKHVARHLFSMWNKKFYFWE*Y 409
S Y R +V ++F W + FWE Y
Sbjct: 753 SIYEELRTNVVNNVFENWRQTGIFWEQY 780
>SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 7.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -2
Query: 482 GIVENMSHAICSQCGTKNFIFGNDTKKSAADMGLEIIESFEVDQNMSDCI 333
G+V N S+ G + + G + AD G EIIE+ E+D D I
Sbjct: 243 GLVSNDSNI---HAGIRTTLSGLSDYDNDADCGFEIIEAREIDTIGIDAI 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,846
Number of Sequences: 5004
Number of extensions: 61325
Number of successful extensions: 205
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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