Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10e03
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0521 + 30001662-30001752,30001883-30001999,30002099-300022... 90 2e-18
04_04_0299 - 24243364-24244259,24244417-24244428,24245092-242451... 83 1e-16
03_05_0387 + 23708447-23708470,23708616-23708739,23709081-237092... 83 1e-16
02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842 83 3e-16
04_01_0394 - 5174718-5174801,5174914-5174959,5175900-5176013,517... 30 2.0
04_04_0285 - 24136865-24137000,24137554-24137611,24138142-241414... 29 3.4
03_05_1043 - 29898829-29898930,29899174-29899234,29899638-298997... 29 3.4
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 28 6.0
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 28 6.0
04_04_0840 + 28570642-28570809,28570919-28571025,28571137-285712... 28 7.9
>01_06_0521 +
30001662-30001752,30001883-30001999,30002099-30002229,
30002320-30002370,30002639-30002689,30002864-30003007,
30003082-30003224,30003376-30003448,30003540-30003635,
30003737-30003835,30003905-30003958,30004032-30004155,
30004420-30004544,30004720-30004842,30004948-30005028
Length = 500
Score = 89.8 bits (213), Expect = 2e-18
Identities = 50/137 (36%), Positives = 74/137 (54%), Gaps = 5/137 (3%)
Frame = -2
Query: 662 WGPLDCLVVDTPPGTGDTHLSLAQNL-PLDGAIVVTTPQSAALQVTKRGINMFEKLKVPI 486
WG LD LV+D PPGTGD HL+L Q + PL A++VTTPQ A +G+ MF KLKVP
Sbjct: 243 WGELDYLVIDMPPGTGDIHLTLCQVVAPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPC 302
Query: 485 IGIVENMSHAICSQCGTKNFIFGN----DTKKSAADMGLEIIESFEVDQNMSDCINSGKP 318
+ +VENM + G + + FG +K G+ + + +S ++G P
Sbjct: 303 VAVVENMCYFDAD--GKRFYPFGQGSGAQARKVVQQFGIPHLFDLPIRPTLSASGDTGIP 360
Query: 317 AIYALPDSIHAEKYRHL 267
+ A P A+ +++L
Sbjct: 361 EVVADPQGDVAKTFQNL 377
>04_04_0299 -
24243364-24244259,24244417-24244428,24245092-24245193,
24245298-24245340
Length = 350
Score = 83.4 bits (197), Expect = 1e-16
Identities = 39/74 (52%), Positives = 52/74 (70%), Gaps = 3/74 (4%)
Frame = -2
Query: 674 RHVAWGPLDCLVVDTPPGTGDTHLSLAQNLPL---DGAIVVTTPQSAALQVTKRGINMFE 504
+ V WG +D LVVD PPGT D H+S+ Q L + DGAI+VTTPQ +L K+ IN +
Sbjct: 168 KDVDWGEIDYLVVDAPPGTSDEHISIVQYLQIAGIDGAIIVTTPQQVSLIDVKKEINFCK 227
Query: 503 KLKVPIIGIVENMS 462
K+ VP++G+VENMS
Sbjct: 228 KVGVPVLGVVENMS 241
>03_05_0387 +
23708447-23708470,23708616-23708739,23709081-23709203,
23710723-23710820,23711778-23711918,23712236-23712361,
23713316-23713486
Length = 268
Score = 83.4 bits (197), Expect = 1e-16
Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 1/159 (0%)
Frame = -2
Query: 680 LTRHVAWGPLDCLVVDTPPGTGDTHLSLAQNLPLDGAIVVTTPQSAALQVTKRGINMFEK 501
+TR VAWG LD LVVD PPGTGD LS++Q L L G
Sbjct: 131 ITRGVAWGNLDILVVDMPPGTGDAQLSMSQRLRLSG------------------------ 166
Query: 500 LKVPIIGIVENMSHAICSQCGTKNFIFG-NDTKKSAADMGLEIIESFEVDQNMSDCINSG 324
+ I+G+VENMS C +CG K++IFG +++A +M +++I ++ ++ + G
Sbjct: 167 IYKSILGLVENMSCFKCPKCGEKSYIFGEGGGQRTAEEMDMKLIGEIPLEIDIRTGSDEG 226
Query: 323 KPAIYALPDSIHAEKYRHLANKVFKYIDDKENHRAKAKE 207
P + + PDS A+ Y +A KV + + R E
Sbjct: 227 TPIVISSPDSASAQAYIQVAEKVIHRLKELAEERQMGPE 265
>02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842
Length = 355
Score = 82.6 bits (195), Expect = 3e-16
Identities = 39/74 (52%), Positives = 52/74 (70%), Gaps = 3/74 (4%)
Frame = -2
Query: 674 RHVAWGPLDCLVVDTPPGTGDTHLSLAQNLP---LDGAIVVTTPQSAALQVTKRGINMFE 504
+ V WG +D LVVD PPGT D H+S+ Q L +DGAI+VTTPQ +L ++ IN +
Sbjct: 172 KDVDWGEIDYLVVDAPPGTSDEHISIVQYLQATGIDGAIIVTTPQQVSLIDVRKEINFCK 231
Query: 503 KLKVPIIGIVENMS 462
K+ VPI+G+VENMS
Sbjct: 232 KVGVPILGVVENMS 245
>04_01_0394 -
5174718-5174801,5174914-5174959,5175900-5176013,
5176323-5176441,5176518-5176589,5176733-5176873,
5177016-5177096,5177378-5177479,5177828-5177865,
5177985-5178087,5178223-5178345,5181004-5181117
Length = 378
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 644 LVVDTPPGTGDTHLSLAQNLPLDGAIVV 561
+ VD+PPGTG T+ + A+ L IVV
Sbjct: 43 IFVDSPPGTGFTYATTAEGLKSSDTIVV 70
>04_04_0285 -
24136865-24137000,24137554-24137611,24138142-24141480,
24141789-24142218,24142861-24142928,24143015-24143165
Length = 1393
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = -2
Query: 506 EKLKVPIIGIVENMSHAICSQCGTKNFIFGNDTKKSA---ADMGL-EIIESFEVDQNMSD 339
++ K + V+ S I QCGT++ +D + +A AD G+ +++ D M D
Sbjct: 325 KRKKAKKVNSVDMASLDIADQCGTEHVQLMSDAQATANLVADQGIDDLVHKEYKDPTMGD 384
Query: 338 CINSGK 321
+NS +
Sbjct: 385 MVNSSE 390
>03_05_1043 -
29898829-29898930,29899174-29899234,29899638-29899744,
29899839-29899943,29900184-29900270,29900553-29900633,
29900834-29900906,29901120-29901232,29901781-29901874,
29902032-29902087,29902171-29902254,29902550-29902642,
29902751-29902924,29903033-29903146,29903404-29903490
Length = 476
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 359 VDQNMSDCINSGKPAIYALPDSIHAEKYRHLA 264
+D MS+CINSG +Y L A RHL+
Sbjct: 77 IDVPMSNCINSGINKVYILTQFNSASLNRHLS 108
>06_03_0715 -
23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = -2
Query: 647 CLVVDTPPGTGDTHLSLAQNLPLDGAIVVTTPQSAALQVTKRGINMFEKLKVPIIGIVEN 468
C ++DTP + A DGA++V + T+R I + ++PI+ ++
Sbjct: 221 CNIMDTPGHVNFSDEMTAALRIADGAVLVVDAAEGVMVNTERAIRHATQERLPIVVVINK 280
Query: 467 MSHAI 453
+ I
Sbjct: 281 VDRLI 285
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 351 LIYFKTFNNLKTHICSRFFGIIPKNKIFCSTLRTNGVRHVFDNTYN 488
+++F +F+N IC + K+ +F T+R + V H FD N
Sbjct: 531 VVFFFSFSNCS--ICGLLYESSVKHIVFFCTIRVDLVLHTFDGNKN 574
>04_04_0840 +
28570642-28570809,28570919-28571025,28571137-28571238,
28571786-28571981,28572691-28572819,28572869-28572895,
28572896-28573090,28573182-28573292
Length = 344
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Frame = -2
Query: 659 GPLDCLVVDTPPGTGDTH--LSLAQNL--P--LDGAIVVTTPQSAALQVTKRGINMFEKL 498
G + L++ PPGTG T LSLA L P + + + L V + I MF +
Sbjct: 48 GNMPNLILSGPPGTGKTTSILSLAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQK 107
Query: 497 KVPI 486
KV +
Sbjct: 108 KVTL 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,801,863
Number of Sequences: 37544
Number of extensions: 349168
Number of successful extensions: 956
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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