Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10e03
(681 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK022722-1|BAB14203.1| 289|Homo sapiens protein ( Homo sapiens ... 133 5e-31
BC024919-1|AAH24919.1| 289|Homo sapiens nucleotide binding prot... 131 3e-30
BC109323-1|AAI09324.1| 320|Homo sapiens nucleotide binding prot... 103 8e-22
BC109322-1|AAI09323.1| 320|Homo sapiens nucleotide binding prot... 103 8e-22
BC100290-1|AAI00291.1| 309|Homo sapiens NUBP1 protein protein. 103 8e-22
AK223204-1|BAD96924.1| 320|Homo sapiens nucleotide binding prot... 103 8e-22
U01833-1|AAA61932.1| 320|Homo sapiens protein ( Human nucleotid... 102 1e-21
AK001023-1|BAA91471.1| 271|Homo sapiens protein ( Homo sapiens ... 84 4e-16
BC008005-1|AAH08005.1| 271|Homo sapiens nucleotide binding prot... 83 9e-16
BC002768-1|AAH02768.1| 271|Homo sapiens nucleotide binding prot... 83 9e-16
AL031724-1|CAC36077.1| 265|Homo sapiens C447E6.1 (nucleotide bi... 83 9e-16
AF118394-1|AAD45242.1| 271|Homo sapiens putative nucleotide bin... 83 9e-16
AB065598-1|BAC05826.1| 201|Homo sapiens seven transmembrane hel... 31 2.9
>AK022722-1|BAB14203.1| 289|Homo sapiens protein ( Homo sapiens
cDNA FLJ12660 fis, clone NT2RM4002174, moderately
similar to MRP PROTEIN. ).
Length = 289
Score = 133 bits (322), Expect = 5e-31
Identities = 61/145 (42%), Positives = 94/145 (64%), Gaps = 1/145 (0%)
Frame = -2
Query: 680 LTRHVAWGPLDCLVVDTPPGTGDTHLSLAQNLPLDGAIVVTTPQSAALQVTKRGINMFEK 501
L R V WG LD LVVD PPGTGD LS++QN+P+ GA++V+TPQ AL +G MF +
Sbjct: 138 LLRQVDWGQLDYLVVDMPPGTGDVQLSVSQNIPITGAVIVSTPQDIALMDAHKGAEMFRR 197
Query: 500 LKVPIIGIVENMSHAICSQCGTKNFIFGND-TKKSAADMGLEIIESFEVDQNMSDCINSG 324
+ VP++G+V+NMS C +C K IFG D +K A +GLE++ + N+ + ++G
Sbjct: 198 VHVPVLGLVQNMSVFQCPKCKHKTHIFGADGARKLAQTLGLEVLGDIPLHLNIREASDTG 257
Query: 323 KPAIYALPDSIHAEKYRHLANKVFK 249
+P +++ P+S A+ Y +A +V +
Sbjct: 258 QPIVFSQPESDEAKAYLRIAVEVVR 282
>BC024919-1|AAH24919.1| 289|Homo sapiens nucleotide binding
protein-like protein.
Length = 289
Score = 131 bits (316), Expect = 3e-30
Identities = 60/145 (41%), Positives = 93/145 (64%), Gaps = 1/145 (0%)
Frame = -2
Query: 680 LTRHVAWGPLDCLVVDTPPGTGDTHLSLAQNLPLDGAIVVTTPQSAALQVTKRGINMFEK 501
L R V WG LD LVVD PPGTGD LS++Q +P+ GA++V+TPQ AL +G MF +
Sbjct: 138 LLRQVDWGQLDYLVVDMPPGTGDVQLSVSQTIPITGAVIVSTPQDIALMDAHKGAEMFRR 197
Query: 500 LKVPIIGIVENMSHAICSQCGTKNFIFGND-TKKSAADMGLEIIESFEVDQNMSDCINSG 324
+ VP++G+V+NMS C +C K IFG D +K A +GLE++ + N+ + ++G
Sbjct: 198 VHVPVLGLVQNMSVFQCPKCKHKTHIFGADGARKLAQTLGLEVLGDIPLHLNIREASDTG 257
Query: 323 KPAIYALPDSIHAEKYRHLANKVFK 249
+P +++ P+S A+ Y +A +V +
Sbjct: 258 QPIVFSQPESDEAKAYLRIAVEVVR 282
>BC109323-1|AAI09324.1| 320|Homo sapiens nucleotide binding protein
1 (MinD homolog, E. coli) protein.
Length = 320
Score = 103 bits (246), Expect = 8e-22
Identities = 54/149 (36%), Positives = 85/149 (57%), Gaps = 6/149 (4%)
Frame = -2
Query: 674 RHVAWGPLDCLVVDTPPGTGDTHLSLAQNLP---LDGAIVVTTPQSAALQVTKRGINMFE 504
R V WG +D L+VDTPPGT D HLS+ + L +DGA+++TTPQ +LQ ++ IN
Sbjct: 158 RDVDWGEVDYLIVDTPPGTSDEHLSVVRYLATAHIDGAVIITTPQEVSLQDVRKEINFCR 217
Query: 503 KLKVPIIGIVENMSHAICSQCGTKNFIFGNDT---KKSAADMGLEIIESFEVDQNMSDCI 333
K+K+PIIG+VENMS IC +C ++ IF T + D+ + ++ +D +
Sbjct: 218 KVKLPIIGVVENMSGFICPKCKKESQIFPPTTGGAELMCQDLEVPLLGRVPLDPLIGKNC 277
Query: 332 NSGKPAIYALPDSIHAEKYRHLANKVFKY 246
+ G+ PDS YR + ++ ++
Sbjct: 278 DKGQSFFIDAPDSPATLAYRSIIQRIQEF 306
>BC109322-1|AAI09323.1| 320|Homo sapiens nucleotide binding protein
1 (MinD homolog, E. coli) protein.
Length = 320
Score = 103 bits (246), Expect = 8e-22
Identities = 54/149 (36%), Positives = 85/149 (57%), Gaps = 6/149 (4%)
Frame = -2
Query: 674 RHVAWGPLDCLVVDTPPGTGDTHLSLAQNLP---LDGAIVVTTPQSAALQVTKRGINMFE 504
R V WG +D L+VDTPPGT D HLS+ + L +DGA+++TTPQ +LQ ++ IN
Sbjct: 158 RDVDWGEVDYLIVDTPPGTSDEHLSVVRYLATAHIDGAVIITTPQEVSLQDVRKEINFCR 217
Query: 503 KLKVPIIGIVENMSHAICSQCGTKNFIFGNDT---KKSAADMGLEIIESFEVDQNMSDCI 333
K+K+PIIG+VENMS IC +C ++ IF T + D+ + ++ +D +
Sbjct: 218 KVKLPIIGVVENMSGFICPKCKKESQIFPPTTGGAELMCQDLEVPLLGRVPLDPLIGKNC 277
Query: 332 NSGKPAIYALPDSIHAEKYRHLANKVFKY 246
+ G+ PDS YR + ++ ++
Sbjct: 278 DKGQSFFIDAPDSPATLAYRSIIQRIQEF 306
>BC100290-1|AAI00291.1| 309|Homo sapiens NUBP1 protein protein.
Length = 309
Score = 103 bits (246), Expect = 8e-22
Identities = 54/149 (36%), Positives = 85/149 (57%), Gaps = 6/149 (4%)
Frame = -2
Query: 674 RHVAWGPLDCLVVDTPPGTGDTHLSLAQNLP---LDGAIVVTTPQSAALQVTKRGINMFE 504
R V WG +D L+VDTPPGT D HLS+ + L +DGA+++TTPQ +LQ ++ IN
Sbjct: 147 RDVDWGEVDYLIVDTPPGTSDEHLSVVRYLATAHIDGAVIITTPQEVSLQDVRKEINFCR 206
Query: 503 KLKVPIIGIVENMSHAICSQCGTKNFIFGNDT---KKSAADMGLEIIESFEVDQNMSDCI 333
K+K+PIIG+VENMS IC +C ++ IF T + D+ + ++ +D +
Sbjct: 207 KVKLPIIGVVENMSGFICPKCKKESQIFPPTTGGAELMCQDLEVPLLGRVPLDPLIGKNC 266
Query: 332 NSGKPAIYALPDSIHAEKYRHLANKVFKY 246
+ G+ PDS YR + ++ ++
Sbjct: 267 DKGQSFFIDAPDSPATLAYRSIIQRIQEF 295
>AK223204-1|BAD96924.1| 320|Homo sapiens nucleotide binding protein
1 (MinD homolog, E. coli) variant protein.
Length = 320
Score = 103 bits (246), Expect = 8e-22
Identities = 54/149 (36%), Positives = 85/149 (57%), Gaps = 6/149 (4%)
Frame = -2
Query: 674 RHVAWGPLDCLVVDTPPGTGDTHLSLAQNLP---LDGAIVVTTPQSAALQVTKRGINMFE 504
R V WG +D L+VDTPPGT D HLS+ + L +DGA+++TTPQ +LQ ++ IN
Sbjct: 158 RDVDWGEVDYLIVDTPPGTSDEHLSVVRYLATAHIDGAVIITTPQEVSLQDVRKEINFCR 217
Query: 503 KLKVPIIGIVENMSHAICSQCGTKNFIFGNDT---KKSAADMGLEIIESFEVDQNMSDCI 333
K+K+PIIG+VENMS IC +C ++ IF T + D+ + ++ +D +
Sbjct: 218 KVKLPIIGVVENMSGFICPKCKKESQIFPPTTGGAELMCQDLEVPLLGRVPLDPLIGKNC 277
Query: 332 NSGKPAIYALPDSIHAEKYRHLANKVFKY 246
+ G+ PDS YR + ++ ++
Sbjct: 278 DKGQSFFIDAPDSPATLAYRSIIQRIQEF 306
>U01833-1|AAA61932.1| 320|Homo sapiens protein ( Human
nucleotide-binding protein mRNA, complete cds. ).
Length = 320
Score = 102 bits (245), Expect = 1e-21
Identities = 54/149 (36%), Positives = 85/149 (57%), Gaps = 6/149 (4%)
Frame = -2
Query: 674 RHVAWGPLDCLVVDTPPGTGDTHLSLAQNLP---LDGAIVVTTPQSAALQVTKRGINMFE 504
R V WG +D L+VDTPPGT D HLS+ + L +DGA+++TTPQ +LQ ++ IN
Sbjct: 158 RDVDWGEVDYLIVDTPPGTSDEHLSVVRYLATAHIDGAVIITTPQELSLQDVRKEINFCR 217
Query: 503 KLKVPIIGIVENMSHAICSQCGTKNFIFGNDT---KKSAADMGLEIIESFEVDQNMSDCI 333
K+K+PIIG+VENMS IC +C ++ IF T + D+ + ++ +D +
Sbjct: 218 KVKLPIIGVVENMSPFICPKCKKESQIFPPTTGGAELMCQDLEVPLLGRVPLDPLIGKNC 277
Query: 332 NSGKPAIYALPDSIHAEKYRHLANKVFKY 246
+ G+ PDS YR + ++ ++
Sbjct: 278 DKGQSFFIDAPDSPATLAYRSIIQRIQEF 306
>AK001023-1|BAA91471.1| 271|Homo sapiens protein ( Homo sapiens
cDNA FLJ10161 fis, clone HEMBA1003555, moderately
similar to NUCLEOTIDE-BINDING PROTEIN. ).
Length = 271
Score = 84.2 bits (199), Expect = 4e-16
Identities = 50/143 (34%), Positives = 73/143 (51%), Gaps = 5/143 (3%)
Frame = -2
Query: 668 VAWGPLDCLVVDTPPGTGDTHLSLAQNL----PLDGAIVVTTPQSAALQVTKRGINMFEK 501
VAWG LD LVVDTPPGT D H++ + L PL GA+VVTTPQ+ ++ +R + K
Sbjct: 121 VAWGELDYLVVDTPPGTSDEHMATIEALRPYQPL-GALVVTTPQAVSVGDVRRELTFCRK 179
Query: 500 LKVPIIGIVENMSHAICSQCGTKNFIFGNDTKKSAADM-GLEIIESFEVDQNMSDCINSG 324
+ ++GIVENMS C C +F + A + G+ + S +D + + G
Sbjct: 180 TGLRVMGIVENMSGFTCPHCTECTSVFSRGGGEELAQLAGVPFLGSVPLDPALMRTLEEG 239
Query: 323 KPAIYALPDSIHAEKYRHLANKV 255
+I P S +A K+
Sbjct: 240 HDSIQEFPGSPAFAALTSIAQKI 262
>BC008005-1|AAH08005.1| 271|Homo sapiens nucleotide binding protein
2 (MinD homolog, E. coli) protein.
Length = 271
Score = 83.0 bits (196), Expect = 9e-16
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 5/143 (3%)
Frame = -2
Query: 668 VAWGPLDCLVVDTPPGTGDTHLSLAQNL----PLDGAIVVTTPQSAALQVTKRGINMFEK 501
VAWG LD LVVDTPPGT D H++ + L PL GA+VVTTPQ+ ++ +R + K
Sbjct: 121 VAWGELDYLVVDTPPGTSDEHMATIEALRPYQPL-GALVVTTPQAVSVGDVRRELTFCRK 179
Query: 500 LKVPIIGIVENMSHAICSQCGTKNFIFGNDTKKSAADM-GLEIIESFEVDQNMSDCINSG 324
+ ++GIVENMS C C +F + A + G+ + S +D + + G
Sbjct: 180 TGLRVMGIVENMSGFTCPHCTECTSVFSRGGGEELAQLAGVPFLGSVPLDPALMRTLEEG 239
Query: 323 KPAIYALPDSIHAEKYRHLANKV 255
I P S +A K+
Sbjct: 240 HDFIQEFPGSPAFAALTSIAQKI 262
>BC002768-1|AAH02768.1| 271|Homo sapiens nucleotide binding protein
2 (MinD homolog, E. coli) protein.
Length = 271
Score = 83.0 bits (196), Expect = 9e-16
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 5/143 (3%)
Frame = -2
Query: 668 VAWGPLDCLVVDTPPGTGDTHLSLAQNL----PLDGAIVVTTPQSAALQVTKRGINMFEK 501
VAWG LD LVVDTPPGT D H++ + L PL GA+VVTTPQ+ ++ +R + K
Sbjct: 121 VAWGELDYLVVDTPPGTSDEHMATIEALRPYQPL-GALVVTTPQAVSVGDVRRELTFCRK 179
Query: 500 LKVPIIGIVENMSHAICSQCGTKNFIFGNDTKKSAADM-GLEIIESFEVDQNMSDCINSG 324
+ ++GIVENMS C C +F + A + G+ + S +D + + G
Sbjct: 180 TGLRVMGIVENMSGFTCPHCTECTSVFSRGGGEELAQLAGVPFLGSVPLDPALMRTLEEG 239
Query: 323 KPAIYALPDSIHAEKYRHLANKV 255
I P S +A K+
Sbjct: 240 HDFIQEFPGSPAFAALTSIAQKI 262
>AL031724-1|CAC36077.1| 265|Homo sapiens C447E6.1 (nucleotide
binding protein 1 (E.coli MinD like) ) protein.
Length = 265
Score = 83.0 bits (196), Expect = 9e-16
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 5/143 (3%)
Frame = -2
Query: 668 VAWGPLDCLVVDTPPGTGDTHLSLAQNL----PLDGAIVVTTPQSAALQVTKRGINMFEK 501
VAWG LD LVVDTPPGT D H++ + L PL GA+VVTTPQ+ ++ +R + K
Sbjct: 115 VAWGELDYLVVDTPPGTSDEHMATIEALRPYQPL-GALVVTTPQAVSVGDVRRELTFCRK 173
Query: 500 LKVPIIGIVENMSHAICSQCGTKNFIFGNDTKKSAADM-GLEIIESFEVDQNMSDCINSG 324
+ ++GIVENMS C C +F + A + G+ + S +D + + G
Sbjct: 174 TGLRVMGIVENMSGFTCPHCTECTSVFSRGGGEELAQLAGVPFLGSVPLDPALMRTLEEG 233
Query: 323 KPAIYALPDSIHAEKYRHLANKV 255
I P S +A K+
Sbjct: 234 HDFIQEFPGSPAFAALTSIAQKI 256
>AF118394-1|AAD45242.1| 271|Homo sapiens putative nucleotide
binding protein protein.
Length = 271
Score = 83.0 bits (196), Expect = 9e-16
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 5/143 (3%)
Frame = -2
Query: 668 VAWGPLDCLVVDTPPGTGDTHLSLAQNL----PLDGAIVVTTPQSAALQVTKRGINMFEK 501
VAWG LD LVVDTPPGT D H++ + L PL GA+VVTTPQ+ ++ +R + K
Sbjct: 121 VAWGELDYLVVDTPPGTSDEHMATIEALRPYQPL-GALVVTTPQAVSVGDVRRELTFCRK 179
Query: 500 LKVPIIGIVENMSHAICSQCGTKNFIFGNDTKKSAADM-GLEIIESFEVDQNMSDCINSG 324
+ ++GIVENMS C C +F + A + G+ + S +D + + G
Sbjct: 180 TGLRVMGIVENMSGFTCPHCTECTSVFSRGGGEELAQLAGVPFLGSVPLDPALMRTLEEG 239
Query: 323 KPAIYALPDSIHAEKYRHLANKV 255
I P S +A K+
Sbjct: 240 HDFIQEFPGSPAFAALTSIAQKI 262
>AB065598-1|BAC05826.1| 201|Homo sapiens seven transmembrane helix
receptor protein.
Length = 201
Score = 31.5 bits (68), Expect = 2.9
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = +2
Query: 188 YPCSLIVLW-----LLLCGFPYH-LYI*KLY*QGVCISLRVCCLGGR 310
Y C L+ ++ LL+CGF YH +Y+ K + C ++VC +G R
Sbjct: 28 YRCPLLAIFFENFFLLMCGFSYHSIYVFKFW--DTCADVQVCYIGIR 72
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,917,212
Number of Sequences: 237096
Number of extensions: 1999401
Number of successful extensions: 8263
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8251
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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