Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10e03
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80216-6|CAB02285.2|  313|Caenorhabditis elegans Hypothetical pr...   108   4e-24
Z78062-5|CAB01500.1|  516|Caenorhabditis elegans Hypothetical pr...    31   0.58 
AL021571-7|CAA16515.1|  516|Caenorhabditis elegans Hypothetical ...    31   0.58 
U28733-2|AAA68303.3|  381|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81069-1|CAB02990.1|  359|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z81568-15|CAB04595.2|  610|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z81568-14|CAB04591.2|  608|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z77665-9|CAB01223.2|  729|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U41273-2|AAA82454.2|  306|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    28   5.4  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    28   5.4  
U39744-1|AAK18882.1|  471|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z80216-6|CAB02285.2|  313|Caenorhabditis elegans Hypothetical
           protein F10G8.6 protein.
          Length = 313

 Score =  108 bits (259), Expect = 4e-24
 Identities = 53/147 (36%), Positives = 85/147 (57%), Gaps = 7/147 (4%)
 Frame = -2

Query: 674 RHVAWGPLDCLVVDTPPGTGDTHLSLAQNL----PLDGAIVVTTPQSAALQVTKRGINMF 507
           + V WG +D L++DTPPGT D H+SL Q L    PLDGA++V+TPQ  +L   ++ ++  
Sbjct: 162 KDVDWGEVDYLLIDTPPGTSDEHISLVQFLLQAGPLDGALIVSTPQEVSLLDVRKEVSFC 221

Query: 506 EKLKVPIIGIVENMSHAICSQCGTKNFIFGNDT---KKSAADMGLEIIESFEVDQNMSDC 336
            K KVPI+G+VENM+  +C  C     +F   T   ++   D  LE++    ++  ++  
Sbjct: 222 VKTKVPILGVVENMARFVCPNCAHTTLLFPTSTGGAEQMCKDSNLELLAQLPLEPALAKA 281

Query: 335 INSGKPAIYALPDSIHAEKYRHLANKV 255
           +++G+      PDS  A+ +  LA KV
Sbjct: 282 LDNGEDFFETNPDSTLAKSFLDLAEKV 308


>Z78062-5|CAB01500.1|  516|Caenorhabditis elegans Hypothetical
           protein F16D3.7 protein.
          Length = 516

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 198 VSLFFGFC-SVVFLIIYIFKNFISKVSVFLCVYAVWEGVNRWLPAV 332
           V+ + G+C S++  IIY F     K S F  V  +W+ VNR LP V
Sbjct: 378 VASWLGYCNSMLNPIIYSFTVKEFKRSAFRLVVPIWQFVNRCLPFV 423


>AL021571-7|CAA16515.1|  516|Caenorhabditis elegans Hypothetical
           protein F16D3.7 protein.
          Length = 516

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 198 VSLFFGFC-SVVFLIIYIFKNFISKVSVFLCVYAVWEGVNRWLPAV 332
           V+ + G+C S++  IIY F     K S F  V  +W+ VNR LP V
Sbjct: 378 VASWLGYCNSMLNPIIYSFTVKEFKRSAFRLVVPIWQFVNRCLPFV 423


>U28733-2|AAA68303.3|  381|Caenorhabditis elegans Hypothetical
           protein C54A12.2 protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 195 VVSLFFGFCSVVFLIIYIFKNFISKVSVFLCVYAVWEG-VNRWLPAVYTI*HILIYF 362
           V+++FFGFC    + + + ++F+ K      +Y    G +  +L  ++T     IY+
Sbjct: 310 VITIFFGFCHFFSMALKLAESFVGKFLTIQNIYLEMLGEIFNYLIIIHTASTFFIYY 366


>Z81069-1|CAB02990.1|  359|Caenorhabditis elegans Hypothetical
           protein F25H9.1 protein.
          Length = 359

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 466 MFSTIPIIGTF-NFSNIFMPLLVTCNAADWGVVTTIAPSKGKFCASDKCVSPVPGGVSTT 642
           MFS   +I  F   S++ + + V C+  +W + +     +G FC   +  S  P  ++ T
Sbjct: 3   MFSKFELIVLFYGLSSLTVLIAVKCHLKNWSIQSNDESCEGDFCIVKRGTSTSPTAITQT 62


>Z81568-15|CAB04595.2|  610|Caenorhabditis elegans Hypothetical
           protein K08E3.3b protein.
          Length = 610

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 587 LPLDGAIVVTTPQSAALQVTKRGINMFEKL 498
           +P+     V  P +A L  T++GI+ FEKL
Sbjct: 2   IPVSRFFTVQDPSNALLSYTQKGIDFFEKL 31


>Z81568-14|CAB04591.2|  608|Caenorhabditis elegans Hypothetical
           protein K08E3.3a protein.
          Length = 608

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 587 LPLDGAIVVTTPQSAALQVTKRGINMFEKL 498
           +P+     V  P +A L  T++GI+ FEKL
Sbjct: 2   IPVSRFFTVQDPSNALLSYTQKGIDFFEKL 31


>Z77665-9|CAB01223.2|  729|Caenorhabditis elegans Hypothetical
           protein K02E11.1 protein.
          Length = 729

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 201 SLFFGFCSVVFLIIYIFKNFISKVSVF 281
           SLFFG  SV  ++ +I  NF+ +++ +
Sbjct: 496 SLFFGLSSVAVVVCFILLNFLKRLAFY 522


>U41273-2|AAA82454.2|  306|Caenorhabditis elegans Hypothetical
           protein C26B9.6 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 509 FEKLKVPIIGIVENMSHAICSQCGTKNFIFGND 411
           + KL +P    +EN  H  C  C   NF  GND
Sbjct: 111 YYKLTIPTR--IENCGHEFCYVCLKSNFAMGND 141


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +3

Query: 360  FKTFNNLKTHICSRFFGIIP-KNKIFC----STLRTNGVRHVFDNTYNRNL*FLEHIYAS 524
            F + N  +TH+CSR F  I  +    C    S    + V  +F +  NR+   +E++ A+
Sbjct: 993  FSSQNTRRTHVCSRLFAEIKGRGATLCGQCPSCPEIHQVERIFVHMLNRHFSTIEYVLAT 1052


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +3

Query: 360  FKTFNNLKTHICSRFFGIIP-KNKIFC----STLRTNGVRHVFDNTYNRNL*FLEHIYAS 524
            F + N  +TH+CSR F  I  +    C    S    + V  +F +  NR+   +E++ A+
Sbjct: 993  FSSQNTRRTHVCSRLFAEIKGRGATLCGQCPSCPEIHQVERIFVHMLNRHFSTIEYVLAT 1052


>U39744-1|AAK18882.1|  471|Caenorhabditis elegans Hypothetical
           protein C03F11.1 protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +1

Query: 454 MACDMFSTIPIIGTFNFSNIFMPLLVTCNAADWGVVTTIAPSKGKFCASDKC--VSPVPG 627
           + C   + +  I  ++ ++I + L V C A DW VV T      +FC    C  + P+PG
Sbjct: 117 VTCSTIALLYHIILYHLNDIVLEL-VDCGADDWRVVVT-TERVIQFCIEFICCGICPLPG 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,155,954
Number of Sequences: 27780
Number of extensions: 347113
Number of successful extensions: 1128
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)