Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10e03
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   6.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.2  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 195 VVSLF-FGFCSVVFLIIYIFKNFISKV 272
           V ++F F +C  + LIIY +   +S V
Sbjct: 212 VATIFTFSYCIPMILIIYYYSQIVSHV 238


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 357 YFKTFNNLKTHICSRFFGIIPKNKIF 434
           Y +TF+ + T I +  F  +P +KIF
Sbjct: 225 YEETFSLVFTKIDNEIFNRVPFDKIF 250


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +1

Query: 532 TCNAADWGVVTTIAPSKGKF 591
           T N   WGV T     KG F
Sbjct: 502 TANGRGWGVKTMKTIKKGSF 521


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -2

Query: 164 YFKNYTKYITTQV*LKR----LQNDVQHRSNEIL 75
           Y KNYTK+ +T+  L +     +N +Q  S+ ++
Sbjct: 446 YNKNYTKFCSTEKRLTKQNTAFENQLQFVSDAVM 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,535
Number of Sequences: 438
Number of extensions: 4334
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)