Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10d22
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   5.6  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   5.6  

>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
 Frame = -3

Query: 299 SQNC*FKKCDKKLVALFLR*TILP*ILC-LSFKVRVIKYIYEKTVSNIAL*IDGRKFKQI 123
           S +C  ++     ++LFL+   L  +L   + K+++   +Y++ + N+        F  I
Sbjct: 546 SCSCNLRENQPGSLSLFLQIDALELLLRKTALKLKLTDAVYQQEMLNVVQRCVSH-FLAI 604

Query: 122 FSSLFTNQYYPFHFIYFRIL*YVLCVVLIYQNVNKSF 12
             S FT+ ++P+   YF IL   +  + +    N++F
Sbjct: 605 NESHFTDFFWPYSQFYFCILSSAIIKMYLDFEFNENF 641


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 12  KTFVYILIDQYYTQYILKYSKVYKMKRIVLI 104
           K FVY+  D YY +  LK+ K ++     ++
Sbjct: 274 KLFVYVSQDGYYWEEALKFHKGFEFDAFTIL 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,076,378
Number of Sequences: 5004
Number of extensions: 39573
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)