Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10d22
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical p...    30   0.96 
U67953-2|AAL13327.1|  340|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    27   9.0  
AL021175-2|CAA15966.1|  322|Caenorhabditis elegans Hypothetical ...    27   9.0  

>U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical
           protein K06C4.8 protein.
          Length = 355

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = -3

Query: 122 FSSLFTNQYYPFHFIYFRIL*YVLCVVLIYQNVNKSF 12
           F +LF++ Y  F F+ F+I+ ++  V+L++ + +  F
Sbjct: 265 FINLFSHNYVQFQFVIFKIIHHISNVLLVFYSASTFF 301


>U67953-2|AAL13327.1|  340|Caenorhabditis elegans Hypothetical
           protein ZC13.1a protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 147 YLESNIAHCFFIYVFDYTHFE*QTQNLRQYSLSKKKGY*LFITFFKLTVL 296
           +L SN      IY F  ++F  +   + +YSLS KK     +T F   VL
Sbjct: 279 FLFSNPGSGVMIYFFSISYFSLKVGEVYRYSLSVKKSVGNLLTVFVSYVL 328


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 495  HKFDVLLTKYVYLFLENENN 436
            +K D LLT Y+ L + N+NN
Sbjct: 2069 YKMDDLLTSYISLLISNQNN 2088


>AL021175-2|CAA15966.1|  322|Caenorhabditis elegans Hypothetical
           protein Y6E2A.2 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -3

Query: 188 YIYEKTVSNIAL*IDGRKFK-QIFSSLFTNQYYPFHFIYFRIL*YVLCVVLI 36
           YI+   +S+IA  +D R+ + Q+F +L      PF F+YF     V C++L+
Sbjct: 229 YIHLYRLSSIAG-LDNRELQNQLFRTLVVQTVIPFFFMYFP----VSCMILL 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,219,481
Number of Sequences: 27780
Number of extensions: 214731
Number of successful extensions: 435
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)