Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10d19
(404 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132859-6|CAB60493.3| 324|Caenorhabditis elegans Hypothetical ... 30 0.55
Z68302-1|CAA92634.2| 382|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z47067-2|CAA87329.1| 498|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z68114-10|CAA92157.2| 322|Caenorhabditis elegans Hypothetical p... 28 2.2
U88171-2|AAB42252.1| 434|Caenorhabditis elegans Glutamate-gated... 27 5.1
U14525-1|AAA50786.1| 434|Caenorhabditis elegans avermectin-sens... 27 5.1
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 26 9.0
U41548-4|AAA83203.1| 322|Caenorhabditis elegans Hypothetical pr... 26 9.0
AC006776-5|AAF60625.1| 358|Caenorhabditis elegans Serpentine re... 26 9.0
>AL132859-6|CAB60493.3| 324|Caenorhabditis elegans Hypothetical
protein Y39C12A.7 protein.
Length = 324
Score = 30.3 bits (65), Expect = 0.55
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -3
Query: 267 FAKMRKQIHTIVLPTVVVIFLLICVYVYIKTRPSTMHD 154
F K I + T+ IF+L+C Y++ K + H+
Sbjct: 224 FTASEKNIFLLSFDTIYTIFILVCPYLHYKNNTTWQHE 261
>Z68302-1|CAA92634.2| 382|Caenorhabditis elegans Hypothetical
protein ZK792.3 protein.
Length = 382
Score = 28.7 bits (61), Expect = 1.7
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -3
Query: 303 ETARQKRERKQEFAK-MRKQIHTIVLPTVVVIFLLICVYVYIKTRPSTMHDA*Q*LYYVN 127
ET ++ + +E A+ MR +I T+ P++ + VY +K + A + +
Sbjct: 147 ETTEKRSSKVKEMARFMRSKITTVHTPSIFSCIRMYSVYSIVKMLYLIIAIAQFVILAIF 206
Query: 126 RIYILDLFWGW 94
D+FWGW
Sbjct: 207 LDQEKDMFWGW 217
>Z47067-2|CAA87329.1| 498|Caenorhabditis elegans Hypothetical
protein C43C3.2 protein.
Length = 498
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 149 YASCIVDGRVLMYTYTQINKNITTTVGNTIVCICFRIFANS 271
+ +C++ +L+Y +++++ IT T + I+ C R F S
Sbjct: 180 FVTCVMLSPILLYAHSKVHFIITETYRHLIMQKCLRFFEGS 220
>Z68114-10|CAA92157.2| 322|Caenorhabditis elegans Hypothetical
protein F17A2.13 protein.
Length = 322
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 40 STKSLTCYHIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRR 168
S++S C S S+ EKP PE V +Y KL VH +
Sbjct: 185 SSESSHCSASSSLSKTEKPEPENSNFVNELYYCKLARSQVHHK 227
>U88171-2|AAB42252.1| 434|Caenorhabditis elegans Glutamate-gated
chloride channelprotein 2 protein.
Length = 434
Score = 27.1 bits (57), Expect = 5.1
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -2
Query: 385 CKTYIHIFVYFCGFVSIEDEEAEGSRQRDS*AEKGKKTRIR-ENAKTNTYDCVTNCRCNI 209
C+T++ + FVS +D + R R+ A K ++ R + E Y C C+
Sbjct: 315 CQTFVFGALLEYAFVSYQDSVRQNDRSREKAARKAQRRREKLEMVDAEVYQ--PPCTCHT 372
Query: 208 F 206
F
Sbjct: 373 F 373
>U14525-1|AAA50786.1| 434|Caenorhabditis elegans
avermectin-sensitive glutamate-gated chloride channel
GluCl beta protein.
Length = 434
Score = 27.1 bits (57), Expect = 5.1
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -2
Query: 385 CKTYIHIFVYFCGFVSIEDEEAEGSRQRDS*AEKGKKTRIR-ENAKTNTYDCVTNCRCNI 209
C+T++ + FVS +D + R R+ A K ++ R + E Y C C+
Sbjct: 315 CQTFVFGALLEYAFVSYQDSVRQNDRSREKAARKAQRRREKLEMVDAEVYQ--PPCTCHT 372
Query: 208 F 206
F
Sbjct: 373 F 373
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
F47A4.2 protein.
Length = 3498
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = -3
Query: 324 KLKGPVKETARQKRERKQEFAKMRK 250
K++ +E ARQ++ER+++ A+MR+
Sbjct: 2685 KVRREKEEAARQEKERQEQEARMRE 2709
>U41548-4|AAA83203.1| 322|Caenorhabditis elegans Hypothetical
protein M02F4.7 protein.
Length = 322
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 242 CICFRIFANSCFLSLFCLAVSLTGPFSFLIFNANKSAKINK 364
C CF+I +N+ + + S+ G + + NA ++A IN+
Sbjct: 191 CACFKIISNTTYYNAMNTCRSMGGTLA-SVHNAGEAAFINR 230
>AC006776-5|AAF60625.1| 358|Caenorhabditis elegans Serpentine
receptor, class w protein90 protein.
Length = 358
Score = 26.2 bits (55), Expect = 9.0
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 77 NHNLKNHPQNKSRMYILFT**SYCYASCIVDGRVLMYTYTQINKNITTTVGNTIVCICFR 256
N NL+N ++++ ++I+F S+ + S G +YT + + + V +C
Sbjct: 258 NKNLRNSKKDRTTIFIIFVATSF-FISEFPLGIADLYTAIWLKEAQFRKLAQNTVLLCDS 316
Query: 257 IF-ANSCFLSLFCLAVSL 307
+F N+ + C ++SL
Sbjct: 317 LFTVNASIHCVVCFSMSL 334
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,537,361
Number of Sequences: 27780
Number of extensions: 192587
Number of successful extensions: 688
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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