Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10d16
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 187 1e-48
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 186 3e-48
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 29 0.46
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 29 0.81
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 1.9
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 1.9
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 2.5
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 3.3
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 26 4.3
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 4.3
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 4.3
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 26 5.7
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.7
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 25 7.6
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 7.6
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 7.6
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 7.6
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 10.0
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 25 10.0
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 10.0
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 187 bits (456), Expect = 1e-48
Identities = 94/219 (42%), Positives = 133/219 (60%), Gaps = 2/219 (0%)
Frame = -2
Query: 673 IEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXD 494
+ GD+++ A+S ELPRYG+K GL N+ AAY+TG +
Sbjct: 69 VNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGE 128
Query: 493 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESK 314
E +++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS RFPG+D E++
Sbjct: 129 FELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETE 188
Query: 313 KFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIR 134
+ + E R +I+G HVAEYM L DDE+ +++QFS I G+ +D +E IY +A+ IR
Sbjct: 189 ELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIR 248
Query: 133 ADPSHKK--KELKKDSVKQKRWNKRKLTLAERKNRIKQK 23
DPS +K K+ + ++ +RKLT ERK R K
Sbjct: 249 EDPSFQKSGKDAAAFKAESLKYTQRKLTAEERKERFNAK 287
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 186 bits (452), Expect = 3e-48
Identities = 94/219 (42%), Positives = 132/219 (60%), Gaps = 2/219 (0%)
Frame = -2
Query: 673 IEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXD 494
+ GD+++ A+S ELPRYG+K GL N+ AAY+TG +
Sbjct: 69 VNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGE 128
Query: 493 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESK 314
E +++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS RFPG+D E++
Sbjct: 129 FELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETE 188
Query: 313 KFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIR 134
+ + E R +I+G HVAEYM L DDE+ +++QFS I G+ +D +E IY +A+ IR
Sbjct: 189 ELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIR 248
Query: 133 ADPSHKK--KELKKDSVKQKRWNKRKLTLAERKNRIKQK 23
DPS +K K+ + + +RKLT ERK R K
Sbjct: 249 EDPSFQKSGKDAAAFKAESLKHTQRKLTAEERKERFNAK 287
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 29.5 bits (63), Expect = 0.46
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -2
Query: 172 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKAS 14
IE KK+ + AD KKE K+ K+ + +KRK +E K+KK S
Sbjct: 451 IEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKS 503
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 28.7 bits (61), Expect = 0.81
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 145 EAIRADPSHKKKELKKDSVKQKRWNKRKL-TLAERKNRIKQKKAS 14
E I PS K+K+ KK+ K+K KR +E + K+KK S
Sbjct: 452 ETISEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKKKKS 496
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 157 KKAHEAIRADPSHKKKELKKDSVKQKRWNKR--KLTLAERKNRIKQKKASFIKR 2
+ A E R + + + K LKK + ++KR K+ K AE K R+++++A + K+
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEK-RLQKERAKYAKQ 760
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = -2
Query: 241 QDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 80
+++++S ++ +K ++ V +KK +E IR+D LK+D K++
Sbjct: 1023 KEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEKER 1076
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 547 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 639
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 175 AIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRK 62
++E+ K EA + + +KKE KK+ K+K+ K K
Sbjct: 430 SVESSEKDEDEAAKKEEKRRKKEAKKEK-KEKKEKKEK 466
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 26.2 bits (55), Expect = 4.3
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -2
Query: 244 EQDDEDSFKRQFSKYIKLGVTADA--IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 71
E+ + S K++ K G D +E I KK + HKKK+ + S K+K +
Sbjct: 166 EKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKK------EHKKKDKESSSKKRKSGS 219
Query: 70 KRKLTLAERKNRIKQKKAS 14
K ++K ++K K S
Sbjct: 220 SDKEEKKKKKIKLKDKPES 238
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 4.3
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 169 EAIYKKAHEAIRADPSHKKKELKKDSVKQKR-WNKRKLTLAERKNRIKQKKASFIKR 2
EAI + EA RA +EL + QKR +R E K R +++ A ++R
Sbjct: 788 EAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAREAKEREQREMAEKLER 844
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -2
Query: 184 TADAIEAIYKKAHEAIRADPSHKKKELK 101
TA IEA+YKKA+ I+ D +H K LK
Sbjct: 174 TAQLIEAVYKKAN--IK-DAAHDSKNLK 198
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.8 bits (54), Expect = 5.7
Identities = 23/101 (22%), Positives = 39/101 (38%)
Frame = -2
Query: 310 FNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRA 131
FNA R+ + A+ D E F + G A+ +IY+ + E IR+
Sbjct: 363 FNASGERSESANVETAQVW----DDREQYFFYEVFPNFNEGSIAEMKSSIYESSQEGIRS 418
Query: 130 DPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFI 8
+ KKE D +K + ++ R + K S +
Sbjct: 419 SSENNKKE---DDLKDSTGDLNTTQVSSRVDNFLLKLPSMV 456
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -2
Query: 157 KKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 2
KK +E + SH+K K KRKL + +++ K+ +++ IK+
Sbjct: 27 KKRYEDEKRKISHQKYTDKLLEANDNETTKRKLLVKQKRKSNKEFQSNIIKK 78
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 7.6
Identities = 21/74 (28%), Positives = 34/74 (45%)
Frame = -2
Query: 223 FKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAER 44
F ++ +YIKL A + + + + A P KE+KK K KR T A
Sbjct: 392 FTKEDGEYIKL--IAGVMRSSGCEVPNWVMALPK-PSKEMKKKLKKSPPKRKRITTRASY 448
Query: 43 KNRIKQKKASFIKR 2
+ +Q+K +IK+
Sbjct: 449 DRQKEQRKKEYIKK 462
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 265 AEYMRSLEQDDEDSFKRQFSKYIK 194
+EY+++L D SFK+ F K+I+
Sbjct: 948 SEYLQALSNLDSRSFKQFFQKFIQ 971
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 171 LKPSTRKPMKPSVRIHPTRRK 109
L PS RKP+ V++HP +K
Sbjct: 384 LLPSLRKPLLNFVKVHPPSQK 404
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 157 KKAHEAIRADPSHKKKE--LKKDSVKQKRWNKRKLTLAERKNRIKQKKA 17
KK E A S K+ E KKD+ + ++W+K T + + K+K A
Sbjct: 5 KKRAEKAEAAKSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEKRKAA 53
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -1
Query: 119 QEERVKERLCQTEALEQTQANIGREEKQNQAKEGFLHQE 3
+EER K+ L + E E+ + + E+K + ++ L QE
Sbjct: 133 EEERRKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQE 171
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -2
Query: 118 KKKELKKDSVKQKRWNKRK 62
KKK+ KK + K+K+ NKRK
Sbjct: 436 KKKKKKKKNNKKKKKNKRK 454
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -2
Query: 130 DPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 23
D KK + +K+ ++Q+R KRK L + ++K+K
Sbjct: 89 DNEAKKMKREKEILRQQR-QKRKSELTQLSQKVKEK 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,872
Number of Sequences: 5004
Number of extensions: 50072
Number of successful extensions: 244
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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