Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10d16
(674 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical pr... 222 2e-58
U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical pr... 34 0.081
AF067610-1|AAC17538.2| 696|Caenorhabditis elegans Hypothetical ... 31 0.57
Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical p... 31 0.75
Z77136-8|CAB00885.2| 278|Caenorhabditis elegans Hypothetical pr... 31 0.99
U53332-1|AAK31529.2| 580|Caenorhabditis elegans Hypothetical pr... 30 1.3
DQ178637-1|ABD75716.1| 580|Caenorhabditis elegans F59G1.4 protein. 30 1.3
L07144-6|AAK21443.1| 834|Caenorhabditis elegans Temporarily ass... 29 2.3
L07144-5|AAU20841.1| 837|Caenorhabditis elegans Temporarily ass... 29 2.3
Z48783-4|CAA88698.1| 359|Caenorhabditis elegans Hypothetical pr... 29 3.0
AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical ... 29 3.0
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 29 4.0
AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical... 29 4.0
AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical ... 29 4.0
AF043692-2|AAB97531.1| 253|Caenorhabditis elegans Hypothetical ... 28 5.3
U97006-5|AAC47967.1| 222|Caenorhabditis elegans Hypothetical pr... 28 7.0
AL110500-21|CAI79283.1| 197|Caenorhabditis elegans Hypothetical... 28 7.0
AF125951-3|AAY86273.1| 244|Caenorhabditis elegans Hypothetical ... 28 7.0
Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical pr... 27 9.2
AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical ... 27 9.2
AL033514-28|CAA22089.1| 340|Caenorhabditis elegans Hypothetical... 27 9.2
AF040643-12|AAB94964.2| 658|Caenorhabditis elegans Hypothetical... 27 9.2
AC006642-4|AAF39830.1| 257|Caenorhabditis elegans Hypothetical ... 27 9.2
>Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical
protein F54C9.5 protein.
Length = 293
Score = 222 bits (543), Expect = 2e-58
Identities = 113/224 (50%), Positives = 144/224 (64%), Gaps = 1/224 (0%)
Frame = -2
Query: 673 IEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXD 494
IEGD +V +AYSHELPRYG+KVGLTNYAAAY+TG +
Sbjct: 69 IEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGE 128
Query: 493 EYNVEPV-DNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAES 317
+YNVE D P F+ LD+GLARTTTG+++F MKG DGG+NVPHS RF G+D ES
Sbjct: 129 DYNVEEEGDRAP--FKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQES 186
Query: 316 KKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAI 137
K++NAE HR I G HVA+YM L+++DED +KRQFSK++ G+ AD + A Y+K H AI
Sbjct: 187 KEYNAEAHRDRILGKHVADYMTYLKEEDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAI 246
Query: 136 RADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIK 5
RAD S K+ K S KR ++LT ERK R+ KKA ++
Sbjct: 247 RADASPAAKKAAKPS---KRHTAKRLTYDERKQRVADKKALLLQ 287
>U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical protein
C34F11.5 protein.
Length = 894
Score = 34.3 bits (75), Expect = 0.081
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -2
Query: 226 SFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADP--SHKKKELKKDSVKQKRWNKRKLTL 53
+ K++ K +K + EA K+ + IR S KKE +K+ K+K K K
Sbjct: 815 TLKKKMRKKVKQQMLKKMEEAAAKENEKEIRKTKKKSKDKKEGRKEESKEKAHKKSKPKK 874
Query: 52 AERKNRIKQKKASFIKR 2
+ R+ + QKKA K+
Sbjct: 875 SNRRGHMNQKKAKRTKK 891
>AF067610-1|AAC17538.2| 696|Caenorhabditis elegans Hypothetical
protein F41A4.1 protein.
Length = 696
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -2
Query: 487 NVEPVDNGPGAFRCYL-DVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKK 311
N EP++ G F C+L TT+G+R G + L + ++FPG +
Sbjct: 68 NAEPIEKKNGGFNCHLHSKSPVLTTSGSRTVGTKTCLENKCLKRSFAFEKFPGRSLVNSS 127
Query: 310 F 308
F
Sbjct: 128 F 128
>Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical
protein R10D12.10 protein.
Length = 497
Score = 31.1 bits (67), Expect = 0.75
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = -2
Query: 175 AIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIK 5
A E + KK E R K+KE +KD K+K K K + K R K+K IK
Sbjct: 354 AEEKVVKKNKEKEREKEKDKEKEKEKDKEKEKEKEKEK-EKDKEKEREKRKSKEKIK 409
>Z77136-8|CAB00885.2| 278|Caenorhabditis elegans Hypothetical
protein ZC376.8 protein.
Length = 278
Score = 30.7 bits (66), Expect = 0.99
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -2
Query: 181 ADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKR--KLTLAERKNRIKQKKASFI 8
ADA++ I +K E +P+ KK KK+ K + K K E+ N+ + KK+
Sbjct: 71 ADAVKKIEEKGEEKKPEEPAKSKKSEKKEKSKNEGSKKEEDKEKEKEKSNKAEDKKSEDP 130
Query: 7 KR 2
K+
Sbjct: 131 KK 132
>U53332-1|AAK31529.2| 580|Caenorhabditis elegans Hypothetical
protein F59G1.4 protein.
Length = 580
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -2
Query: 199 IKLGVTADAIEAIYKKAHEAI---RADPSHKKKELKKDSVKQKRWNKRKLTLAERK 41
I +G++ A+E YKKA + I + D +KKK+ K+ K+K R + L RK
Sbjct: 422 INIGLSDGAVE--YKKAQDEITRKKEDEENKKKKEKEKVEKEKMKALRHIQLTSRK 475
>DQ178637-1|ABD75716.1| 580|Caenorhabditis elegans F59G1.4 protein.
Length = 580
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -2
Query: 199 IKLGVTADAIEAIYKKAHEAI---RADPSHKKKELKKDSVKQKRWNKRKLTLAERK 41
I +G++ A+E YKKA + I + D +KKK+ K+ K+K R + L RK
Sbjct: 422 INIGLSDGAVE--YKKAQDEITRKKEDEENKKKKEKEKVEKEKMKALRHIQLTSRK 475
>L07144-6|AAK21443.1| 834|Caenorhabditis elegans Temporarily
assigned gene nameprotein 84, isoform a protein.
Length = 834
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -2
Query: 181 ADAIEAIYKKAH--EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFI 8
+D + YK +H E +R + K+E K +VKQ W++ K TL ++ + K+ I
Sbjct: 421 SDIHNSFYKVSHDSEVLRCEFETVKEEYNK-TVKQSEWDEMKATLNTLRSMNRSLKSEKI 479
Query: 7 K 5
+
Sbjct: 480 R 480
>L07144-5|AAU20841.1| 837|Caenorhabditis elegans Temporarily
assigned gene nameprotein 84, isoform b protein.
Length = 837
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -2
Query: 181 ADAIEAIYKKAH--EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFI 8
+D + YK +H E +R + K+E K +VKQ W++ K TL ++ + K+ I
Sbjct: 421 SDIHNSFYKVSHDSEVLRCEFETVKEEYNK-TVKQSEWDEMKATLNTLRSMNRSLKSEKI 479
Query: 7 K 5
+
Sbjct: 480 R 480
>Z48783-4|CAA88698.1| 359|Caenorhabditis elegans Hypothetical
protein F33H1.3 protein.
Length = 359
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = -2
Query: 235 DEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLT 56
D ++ +KY L T + A+ ++ + P H KK V NKR++T
Sbjct: 35 DRQQIRQAMAKYCNLDETTSKLLALERQIL-GLDPQPFHIDVLRKKQKVLTDSINKRRMT 93
Query: 55 LAERKNRIKQKK 20
L + K + KK
Sbjct: 94 LQQGKEDAELKK 105
>AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical
protein Y106G6D.3 protein.
Length = 555
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = -2
Query: 124 SHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 2
S +KK+L+K+ ++ + +KRK +ER+ + + K+ + K+
Sbjct: 70 SRRKKKLRKEKSRKSQRSKRKKRESERRKKERSKRIARSKK 110
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 28.7 bits (61), Expect = 4.0
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Frame = -2
Query: 355 HSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEY---MRSLEQDDEDSFKRQFSKYIKLGV 185
H++ F D + K A V R G V EY M+ + +D + + K K+ +
Sbjct: 474 HAVTYFTDADMKYIKSIATVIRQS--GFDVPEYLMEMKKVSRDRKKDMLKHAPKRHKIAI 531
Query: 184 TADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKN 38
+ + K +A + + K E + +K+ K+KL KN
Sbjct: 532 VKEQVIKKKKMLAKAAAEEKAKNKTETQTAEKPEKKIKKKKLIKKNNKN 580
>AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical
protein F36H12.3 protein.
Length = 335
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 130 DPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 20
D +KKE KKD ++K+ K++ E+K K++K
Sbjct: 160 DKDDEKKEEKKDDKEEKKEEKKEEKKEEKKEEKKEEK 196
>AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical
protein E03H12.5 protein.
Length = 210
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -2
Query: 157 KKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 20
+K E + D +KK+ KKD K+K +K + +++ + K++K
Sbjct: 124 EKKDEEKKDDKKDEKKDEKKDEKKEKSKKSKKSSKSKKSKKSKREK 169
>AF043692-2|AAB97531.1| 253|Caenorhabditis elegans Hypothetical
protein C17F3.3 protein.
Length = 253
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/81 (24%), Positives = 37/81 (45%)
Frame = -2
Query: 262 EYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQ 83
E + E+ +D K+ K K + + I K + +++ KK E K+D K+
Sbjct: 71 EEKKEEEKKADDEKKKTEEKDDKKSKKTEEKDKISVKKTQETKSERKDKKDEKKEDEKKE 130
Query: 82 KRWNKRKLTLAERKNRIKQKK 20
+ K K ++K+ +K KK
Sbjct: 131 ESKEKSK-DEEKKKDEVKDKK 150
>U97006-5|AAC47967.1| 222|Caenorhabditis elegans Hypothetical
protein C13F10.7 protein.
Length = 222
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -2
Query: 118 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 20
K+K+LKK + K+K+ +KL ERK K+K+
Sbjct: 131 KEKKLKKKAKKEKK-KAKKLEKKERKKERKEKR 162
>AL110500-21|CAI79283.1| 197|Caenorhabditis elegans Hypothetical
protein Y87G2A.20 protein.
Length = 197
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Frame = -2
Query: 157 KKAHEAIRADPSHKKKELKKDSVKQKR--WNKRKLTLAERK-NRIKQKKAS 14
KK E +AD + KK+ KKD+ K+K+ +K+K A++K + KQ+ AS
Sbjct: 53 KKRKERKKADKA--KKKTKKDAAKRKKKSKDKKKKQKAQKKAEKPKQQPAS 101
>AF125951-3|AAY86273.1| 244|Caenorhabditis elegans Hypothetical
protein D2063.4 protein.
Length = 244
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +2
Query: 158 VDGFNSICSDS*FYVLAELSLERILIILFK--TSHVFSNMQTKDVSPVYFSIELF 316
VDGF ++CS S V + L ++++ +L + +HV ++ ++++ + IE++
Sbjct: 53 VDGFRNVCSGSDLSVRSNLDVKQLSELLKEDPCTHVAGDVVIENLTDIAIPIEVY 107
>Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical
protein F17B5.1a protein.
Length = 777
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = -2
Query: 235 DEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLT 56
+E++ K+Q + +L A+ IY++ + KKKE + K + K+K
Sbjct: 549 EEEARKKQEEEEARL--KAEEELKIYEEEKRKKELEEERKKKEELEIKRKAEEEKKKKAL 606
Query: 55 LAERKNRIKQKKA 17
E+K +I ++KA
Sbjct: 607 EEEKKRKIAEEKA 619
>Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical
protein R07E5.1 protein.
Length = 812
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 118 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKAS 14
KKK+ KK+ K+K+ K K + E+K + K +S
Sbjct: 763 KKKKDKKEKEKKKKSKKSKKSKKEKKTKRKHSSSS 797
>AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical
protein T06D10.2 protein.
Length = 479
Score = 27.5 bits (58), Expect = 9.2
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = -2
Query: 253 RSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRW 74
+ LE+D + KR+ ++ K D E + K R +KKE K+ ++K+
Sbjct: 142 KKLEEDKKKEEKRKEAEEKK---KKDEEEKMKKDEERNKRKKEEEEKKEAKRREDEEKKE 198
Query: 73 NKRK--LTLAERKNRIKQKKASFIKR 2
KRK + ERK R A F +
Sbjct: 199 AKRKEEEAIEERKRRQSALFAKFFSK 224
>AL033514-28|CAA22089.1| 340|Caenorhabditis elegans Hypothetical
protein Y75B8A.29 protein.
Length = 340
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -2
Query: 118 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASF 11
KKK+ +K + + K+++ L + K IK+K A+F
Sbjct: 135 KKKDQRKHAEIRSNQIKKRIQLLKNKTAIKEKNANF 170
>AF040643-12|AAB94964.2| 658|Caenorhabditis elegans Hypothetical
protein F14D2.9 protein.
Length = 658
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 229 DSFKRQFSKYIKLGVTADAIEAIYKKAHE 143
D R S+YIK T+D IE + KK +E
Sbjct: 408 DDLVRVSSEYIKFPTTSDEIETMTKKFYE 436
>AC006642-4|AAF39830.1| 257|Caenorhabditis elegans Hypothetical
protein F49H12.5 protein.
Length = 257
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -2
Query: 157 KKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 23
+K EA + + +KKE KKD K ++ ++K ++K K+K
Sbjct: 174 EKKEEAKKEEKKVEKKEEKKDKKKDEKKEEKKEKKEDKKKDEKKK 218
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,617,328
Number of Sequences: 27780
Number of extensions: 293501
Number of successful extensions: 1228
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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