Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10d15
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 193 2e-50
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 71 1e-13
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 29 0.51
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 28 1.6
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 27 3.6
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 26 4.8
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.8
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 26 6.3
SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces pom... 25 8.4
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 193 bits (471), Expect = 2e-50
Identities = 105/237 (44%), Positives = 143/237 (60%), Gaps = 6/237 (2%)
Frame = -3
Query: 727 LVDLASKHFSGLKNSACDVEL-----TPCRYTGSEIRVRDDSMPLAHVAIAVEGAGWTDA 563
LV LA K+F L+ SA + L R+ GSEIR RDD P A++AIAVEG W
Sbjct: 217 LVKLAEKYFGHLEPSAEQLSLGAPRGLKPRFVGSEIRARDDDSPTANIAIAVEGMSWKHP 276
Query: 562 DNIPLMVANTLIGAWDRSQGGGANNASYLARAASVGNLCHSFQSFNTCYKDTGLWGIYFV 383
D +V +IG WDR+ G + +S L+ L +SF SF+T Y DTGLWGIY V
Sbjct: 277 DYFTALVMQAIIGNWDRAMGASPHLSSRLSTIVQQHQLANSFMSFSTSYSDTGLWGIYLV 336
Query: 382 AESL-QLDDMLYNIQKEWMKLCTSVTEGEVERAKNLLKTNMLLQLDGTTPVCEDIGRQML 206
E+L ++DD+++ + W +L T T EVERAK L+ ++LL LD TT + EDIGRQ+L
Sbjct: 337 TENLGRIDDLVHFTLQNWARL-TVATRAEVERAKAQLRASLLLSLDSTTAIAEDIGRQLL 395
Query: 205 CYNRRIPIHELDARIESVTVQNVRDVCYKYLFDRCPAVAAVGPTEGLPDYTRIRGGM 35
RR+ E+D RI +T ++V V + ++D+ AV+AVG EGL DY RIR +
Sbjct: 396 TTGRRMSPQEVDLRIGQITEKDVARVASEMIWDKDIAVSAVGSIEGLLDYNRIRSSI 452
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 71.3 bits (167), Expect = 1e-13
Identities = 60/202 (29%), Positives = 90/202 (44%), Gaps = 15/202 (7%)
Frame = -3
Query: 673 VELTPCRYTGSEIRVRDDSMP-------LAHVAIAVEGAGWTDADNIPLMVANTLIGAWD 515
+E P YTG + ++ P HV IA+EG TD D L L+G
Sbjct: 258 LEAIPSHYTGGFMGIKKSEAPPVPYQQEFTHVVIAMEGLPVTDPDIYALACLQFLLGGGG 317
Query: 514 RSQGGGANNASYLARAASVGNL---CHSFQSFNTCYKDTGLWGIYFVAESLQLDDMLYN- 347
GG Y +V N + +FN Y D+GL+G++ LDD +
Sbjct: 318 SFSAGGPGKGMYSRLYLNVLNQYPWVETCMAFNHSYTDSGLFGMFVTI----LDDAAHLA 373
Query: 346 ---IQKEWMKLCTSVTEGEVERAKNLLKTNMLLQLDGTTPVCEDIGRQMLCYN-RRIPIH 179
I +E SVT E ERAKN LK+++L+ L+ ED+GRQ+ N I
Sbjct: 374 APLIIRELCNTVLSVTSEETERAKNQLKSSLLMNLESRMISLEDLGRQIQTQNGLYITPK 433
Query: 178 ELDARIESVTVQNVRDVCYKYL 113
E+ +I+++T ++ V + L
Sbjct: 434 EMIEKIDALTPSDLSRVARRVL 455
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 29.5 bits (63), Expect = 0.51
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Frame = -3
Query: 334 WMKLCTSVTEGEVERAKNLLKTNMLLQLDGTTPVCEDI--GRQMLCYNRRIPIHELDARI 161
+ K C+ V + E KN + N LL + ED+ Q L Y + + I
Sbjct: 458 YQKQCSLVKDSNEEGLKNFVSPNTLLDVFKVFDAMEDVELDSQSLSYIHQTLVFLYSLEI 517
Query: 160 ESVTVQN-VRDVCYKYLFDRCPAVAAVGPTEGLPDYTRI 47
+++ QN V + + D+ PT+GL Y +
Sbjct: 518 QNLLSQNQFPTVYFTKISDQINNYEGELPTDGLKYYIEL 556
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.9 bits (59), Expect = 1.6
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 246 PSSCKSMLVLSKFLARSTSPSVT-DVQSFIHSF-WMLYNISSSCRLSAT 386
P SC L+ F SV+ D SF H WML N+ S CR+ A+
Sbjct: 835 PLSCIPSSSLTNFTQPLVPFSVSRDPISFYHPLHWMLSNLFSYCRVDAS 883
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 220 GRQMLCYNRRIPIHELDARIESVTVQNVRDVCYKYL 113
G ML Y+ + HE+ + V + D C KYL
Sbjct: 183 GHTMLVYSNSLLNHEIIVTTSDIAVGDYLDKCAKYL 218
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 222 ISSQTGVVPSSCKSMLVLSKFLARSTSPSV 311
ISS G PS C SM SKF S ++
Sbjct: 133 ISSVAGYYPSPCLSMYNASKFAVEGLSQTI 162
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +3
Query: 243 VPSSCKSMLVLSKFLARSTSPSVTDVQSFIHSFWMLYNISSSCRLSATK*MPHRPVS 413
+ SCK++ + S+ + + SP T +++++ S W L + SS + + T P P S
Sbjct: 558 INDSCKAIDIHSEKPSFADSPRKTSLRNYLSSSWRLKFMRSSYQNNETD--PLNPTS 612
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 331 SIPSGCYITYRQVVDSQLQSKCPIDQCLYNKC*RTGN 441
S+ S + RQVV Q+ C + CL + TGN
Sbjct: 97 SLISSQIVNQRQVVQEQMYFLCNLKNCLIDNNFPTGN 133
>SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 475 ARAASVGNLCHSFQSFNTCYKDTGLW 398
A A+V +F TC+K+T LW
Sbjct: 170 AEQAAVSKFRSTFPVNRTCFKETALW 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,220
Number of Sequences: 5004
Number of extensions: 55954
Number of successful extensions: 188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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