Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10d15
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,583... 219 2e-57
01_06_0459 + 29538025-29538579,29539190-29539354,29539448-295395... 186 2e-47
01_07_0301 + 42607239-42607277,42607374-42607577,42607669-426079... 85 7e-17
01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454... 76 3e-14
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 72 5e-13
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 69 4e-12
02_05_0773 + 31654985-31655365,31655486-31655610,31655712-316560... 29 3.8
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 29 5.0
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 29 5.0
08_01_1067 + 10893720-10894585,10895125-10895348,10895518-108957... 29 5.0
03_02_0466 - 8690469-8690522,8691008-8691113,8691216-8691457,869... 29 5.0
11_04_0240 - 15246357-15246935,15247100-15247561 28 8.7
01_01_0578 - 4296867-4296913,4296927-4297015,4297270-4297394,429... 28 8.7
>03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,
5839496-5839647,5839754-5839862,5840551-5840649,
5840739-5840804,5840891-5840998,5841820-5841906
Length = 533
Score = 219 bits (534), Expect = 2e-57
Identities = 109/239 (45%), Positives = 156/239 (65%), Gaps = 4/239 (1%)
Frame = -3
Query: 727 LVDLASKHFSGLKNSACD----VELTPCRYTGSEIRVRDDSMPLAHVAIAVEGAGWTDAD 560
+V++A+K F+ L V P +TGSE+R+ DD MPLA A+A GA W D D
Sbjct: 294 IVEMATKLFNDLPTDPTTTSMLVSTQPACFTGSEVRIIDDDMPLAQFAVAFNGASWIDPD 353
Query: 559 NIPLMVANTLIGAWDRSQGGGANNASYLARAASVGNLCHSFQSFNTCYKDTGLWGIYFVA 380
+I LMV +++G+W++S GGG + S L + ++ ++ S +FNT YKDTGL+G+Y VA
Sbjct: 354 SIALMVMQSMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNTNYKDTGLFGVYAVA 413
Query: 379 ESLQLDDMLYNIQKEWMKLCTSVTEGEVERAKNLLKTNMLLQLDGTTPVCEDIGRQMLCY 200
+ LDD+ + I +E KL VTE +V RA+N LK+++ L LDG+T V EDIGRQ+L Y
Sbjct: 414 KPDCLDDLAFAIMQEISKLSYRVTEEDVIRARNQLKSSIQLHLDGSTAVVEDIGRQLLIY 473
Query: 199 NRRIPIHELDARIESVTVQNVRDVCYKYLFDRCPAVAAVGPTEGLPDYTRIRGGMYWVR 23
RRIPI EL ARI++V V+ V +++FD+ A+AA+GP +GLPDY R Y +R
Sbjct: 474 GRRIPIPELFARIDAVDASTVKRVANRFIFDQDIAIAAMGPIQGLPDYNWFRRRTYMLR 532
>01_06_0459 +
29538025-29538579,29539190-29539354,29539448-29539585,
29539685-29539836,29539949-29540057,29540281-29540379,
29541051-29541116,29541208-29541315,29541428-29541553
Length = 505
Score = 186 bits (453), Expect = 2e-47
Identities = 100/236 (42%), Positives = 140/236 (59%), Gaps = 4/236 (1%)
Frame = -3
Query: 727 LVDLASKHFSGLKNSACDV----ELTPCRYTGSEIRVRDDSMPLAHVAIAVEGAGWTDAD 560
+VD + F+G V E P +TGSE+RV MPL H AIA +G+ W +
Sbjct: 253 VVDQVREFFTGFSTDPTTVDQLVEANPAIFTGSEVRVEQPEMPLTHFAIAFKGSSWANPS 312
Query: 559 NIPLMVANTLIGAWDRSQGGGANNASYLARAASVGNLCHSFQSFNTCYKDTGLWGIYFVA 380
+IPLMV +++G W+RS G G + S LAR S GNL S +FNT Y+DTGL+GI +A
Sbjct: 313 SIPLMVIQSILGTWNRSIGVGNCSGSALARGISNGNLAESMIAFNTNYRDTGLFGICTIA 372
Query: 379 ESLQLDDMLYNIQKEWMKLCTSVTEGEVERAKNLLKTNMLLQLDGTTPVCEDIGRQMLCY 200
+ L D+ I +E+ +L V+E EV RA+N LK+ +LL +DG+T V E+ GRQML Y
Sbjct: 373 QPDSLYDLSQLIMQEFRRLAFEVSETEVARARNQLKSALLLHIDGSTAVSENNGRQMLTY 432
Query: 199 NRRIPIHELDARIESVTVQNVRDVCYKYLFDRCPAVAAVGPTEGLPDYTRIRGGMY 32
R +P EL ARI++V V + ++ D+ A+AAVGP LP+ + R Y
Sbjct: 433 GRVMPFLELFARIDAVDRDTVMETAKDFIIDKDIALAAVGPLTNLPELSWFRSHTY 488
>01_07_0301 +
42607239-42607277,42607374-42607577,42607669-42607965,
42608055-42608222,42608393-42608560,42608653-42608733,
42608844-42608910,42609326-42609423,42609665-42609737,
42609826-42609896,42610013-42610062,42610145-42610257,
42610341-42610384
Length = 490
Score = 84.6 bits (200), Expect = 7e-17
Identities = 71/232 (30%), Positives = 112/232 (48%), Gaps = 8/232 (3%)
Frame = -3
Query: 727 LVDLASKHFSGLKNSACDVELTPCRYTGSEIRVRDDSMPLAHVAIAVE-GAGWTDADNIP 551
L+D+A S + VE +Y G + R R DS + HVA+A E GW + +
Sbjct: 256 LLDVAEPLLSDWHKGS-PVERPESKYIGGDFRHRADS-EMTHVALAFEVPGGWLEERDAT 313
Query: 550 LM-VANTLIGAWDR-SQGG---GANNASYLARAASVGNLCHSFQSFNTCYKDTGLWGIYF 386
+M V TL+G S GG G ++ YL R + + SF F+ + +GL+GIY
Sbjct: 314 IMTVVQTLMGGGGSFSSGGPGKGMHSRLYL-RVLTKYHTVESFSVFSNAFDRSGLFGIYL 372
Query: 385 VAESLQLDDMLYNIQKEWMKLCT--SVTEGEVERAKNLLKTNMLLQLDGTTPVCEDIGRQ 212
S + + KE + + T VT+ E+ RAKN + +L+ L+ V EDIGRQ
Sbjct: 373 TTPSDFVAKAVDIATKELIAIATPGQVTDIELARAKNSTISAVLMNLESRVIVAEDIGRQ 432
Query: 211 MLCYNRRIPIHELDARIESVTVQNVRDVCYKYLFDRCPAVAAVGPTEGLPDY 56
+L Y R P+ ++ +T+ ++ K L P +A+ G + +P Y
Sbjct: 433 ILTYGCRKPVDHFLQCMDEMTLDDITAFAKKML-SSPPTMASWGDVDKVPPY 483
>01_06_0648 -
30844289-30844341,30844536-30844648,30845435-30845484,
30845572-30845642,30845725-30845797,30846744-30846841,
30846936-30847002,30847150-30847230,30847312-30847479,
30847563-30847730,30847813-30848109,30848205-30848426,
30849287-30849325
Length = 499
Score = 75.8 bits (178), Expect = 3e-14
Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 7/209 (3%)
Frame = -3
Query: 652 YTGSEIRVRDDSMPLAHVAIAVE-GAGWTDADN-IPLMVANTLIGAWDRSQGGGANNASY 479
Y G + R + DS H+A+A E GW + I + V L+G GG +
Sbjct: 286 YVGGDYRCQADS-DKTHIALAFEVPGGWFEEKTAIIVTVLQMLMGGGGSFSAGGPGKGMH 344
Query: 478 LARAASVGNLCH---SFQSFNTCYKDTGLWGIYFVAESLQLDDMLYNIQKEWMKLCT--S 314
+ N H SF +FN+ Y +GL+GI+ + E +++ T
Sbjct: 345 SRLYLRILNNYHQIESFSAFNSIYNHSGLFGIHATTSPNFASKAVDLAAGELLEVATPGK 404
Query: 313 VTEGEVERAKNLLKTNMLLQLDGTTPVCEDIGRQMLCYNRRIPIHELDARIESVTVQNVR 134
VT+ +++RAK K+ +L+ L+ EDIGRQ+L Y R PI +E++T+ ++
Sbjct: 405 VTQEQLDRAKQATKSAVLMNLESRVVASEDIGRQILTYGERKPIEHFLKDLEAITLNDIS 464
Query: 133 DVCYKYLFDRCPAVAAVGPTEGLPDYTRI 47
K + +A+ G +P Y +
Sbjct: 465 STAKKIISSPL-TLASWGDVIHVPSYESV 492
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 71.7 bits (168), Expect = 5e-13
Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 8/188 (4%)
Frame = -3
Query: 652 YTGSEIRVRDDSMPLAHVAIAVE-GAGWTDADNIPLM-VANTLIGAWDR-SQGG---GAN 491
Y G + + DS H+A+A E GW ++ V L+G S GG G +
Sbjct: 338 YVGGDYHCQADSTS-THIALAFEVPGGWRQEKTAMIVTVLQVLMGGGGSFSTGGPGKGMH 396
Query: 490 NASYLARAASVGNLCHSFQSFNTCYKDTGLWGIYFVAESLQLDDMLYNIQKEWMKLCT-- 317
+ YL + G + SF +F++ Y ++GL+GI+ + + +E ++ T
Sbjct: 397 SWLYLRVLNNYGQI-ESFSAFSSIYNNSGLFGIHATTNPDFVSSAVDLAARELHEVATPG 455
Query: 316 SVTEGEVERAKNLLKTNMLLQLDGTTPVCEDIGRQMLCYNRRIPIHELDARIESVTVQNV 137
VT+ +++RAK K+++L+ L+ EDIGRQ+L Y R PI +E +T+ ++
Sbjct: 456 KVTQEQLDRAKEATKSSVLMDLESRIVASEDIGRQVLTYGERKPIEYFLKTVEEITLNDI 515
Query: 136 RDVCYKYL 113
K +
Sbjct: 516 SSTAKKII 523
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 68.9 bits (161), Expect = 4e-12
Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 6/210 (2%)
Frame = -3
Query: 652 YTGSEIRVRDDSMPLAHVAIAVE-GAGWT-DADNIPLMVANTLIGAWDRSQGG--GANNA 485
Y G E R DS VA+A E GW + + + + V TL+G G G
Sbjct: 293 YVGGEYRRTADSSN-TDVALAFEVPGGWLKEKEFVTVSVLQTLLGGGGTYSWGRHGKGLH 351
Query: 484 SYLARAASVGNLCHSFQSFNTCYKDTGLWGIYFVAESLQLDDMLYNIQKEWMKLCT--SV 311
S L A+ + S +F + +TG++GI+ ++ + + +E L T V
Sbjct: 352 SSLNHLANEFDQIRSIAAFKDVHSNTGIFGIHTSTDAAFVPKAIDLATRELTSLATPGKV 411
Query: 310 TEGEVERAKNLLKTNMLLQLDGTTPVCEDIGRQMLCYNRRIPIHELDARIESVTVQNVRD 131
+ +++RAK K+ +L+ L+ ED+GRQ+L + R P+ L ++ VT++++
Sbjct: 412 DQTQLDRAKATAKSAILMNLESKASATEDMGRQILAFGERKPVEHLLKAVDGVTLKDITA 471
Query: 130 VCYKYLFDRCPAVAAVGPTEGLPDYTRIRG 41
+ K + +A+ G +P Y + G
Sbjct: 472 LAEKIISSPL-TMASHGNVLNVPTYDSVSG 500
>02_05_0773 +
31654985-31655365,31655486-31655610,31655712-31656026,
31656145-31656314,31656408-31656751
Length = 444
Score = 29.1 bits (62), Expect = 3.8
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = -3
Query: 316 SVTEGEVERAKN-LLKTNMLLQLDGTTPVCEDIGRQMLCYNRRIPIHELDARIESVTVQN 140
S+ +G RAK LLK L VC G + R +H A +E+ V+N
Sbjct: 201 SIRDGRYTRAKGMLLKLRSLDMPMELEDVCTIAG-DGVAPGR---LHVARAMVEAGYVEN 256
Query: 139 VRDVCYKYLFDRCPAVA 89
+R +YL+D PA A
Sbjct: 257 IRQAFSRYLYDGGPAYA 273
>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = -3
Query: 349 NIQKEWMKLCTSVTEGEVERAKNLLKTNMLLQLDGTTPVCEDIGRQMLCYNRRIPIHELD 170
N K W ++C + + E R + N+++Q+D V E + C+N I + E
Sbjct: 1262 NSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSE-YYQNRGCFNELISLMESG 1320
Query: 169 ARIE 158
+E
Sbjct: 1321 LGLE 1324
>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = -3
Query: 349 NIQKEWMKLCTSVTEGEVERAKNLLKTNMLLQLDGTTPVCEDIGRQMLCYNRRIPIHELD 170
N K W ++C + + E R + N+++Q+D V E + C+N I + E
Sbjct: 1262 NSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSE-YYQNRGCFNELISLMESG 1320
Query: 169 ARIE 158
+E
Sbjct: 1321 LGLE 1324
>08_01_1067 +
10893720-10894585,10895125-10895348,10895518-10895708,
10896082-10896390
Length = 529
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/77 (29%), Positives = 30/77 (38%)
Frame = -3
Query: 556 IPLMVANTLIGAWDRSQGGGANNASYLARAASVGNLCHSFQSFNTCYKDTGLWGIYFVAE 377
IP+MV + QGG ASYLAR A S F Y GI+F+
Sbjct: 298 IPMMVIEGNHEIEPQGQGGAVTFASYLARFAVPSEESGSNTKF---YYSFNAGGIHFIML 354
Query: 376 SLQLDDMLYNIQKEWMK 326
+D Q W++
Sbjct: 355 GAYVDYNRTGAQYSWLE 371
>03_02_0466 -
8690469-8690522,8691008-8691113,8691216-8691457,
8691477-8691546,8692224-8692499,8693058-8693137,
8693408-8693489,8693566-8693663,8693868-8693936,
8694015-8694113,8694681-8694737,8694874-8695039,
8695152-8695196,8695286-8695347,8695425-8695532,
8695719-8695769,8695843-8695944,8696362-8696448,
8696560-8696823,8696977-8697189,8697337-8697398,
8697517-8697849,8697943-8698138
Length = 973
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 307 QLQMYRVSSIPSGCYITYRQVVDSQLQSKCPIDQCL 414
++ +Y S+PS + R++++ L ++C I CL
Sbjct: 565 KIDLYIAQSMPSFILLNMRRLIEQSLPAECDIRSCL 600
>11_04_0240 - 15246357-15246935,15247100-15247561
Length = 346
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 376 SQLQSK-CPIDQCL-YNKC*RTGNCGRGCPLRQHALGMKHYWHHHLESG 516
SQ+Q K C QC Y+ RTG G+ R K +HH+L SG
Sbjct: 134 SQIQRKRCCGPQCSRYSPFPRTGQQGQAMMERNKENAAKKKYHHYLGSG 182
>01_01_0578 -
4296867-4296913,4296927-4297015,4297270-4297394,
4297476-4297522,4297864-4298222,4298386-4298552,
4298800-4298846,4299148-4299193,4299586-4299669,
4300801-4300869
Length = 359
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 514 RSQGGGANNASYLARAASVGNLCHSFQSFNTC-YKDTGL 401
+ Q GGA N SYLAR C F S + C ++D G+
Sbjct: 316 KQQSGGAANESYLARLMEA---CIFFVSLDRCSWRDGGM 351
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,951,576
Number of Sequences: 37544
Number of extensions: 388724
Number of successful extensions: 1101
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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