Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10d15
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68270-1|CAA92566.2|  458|Caenorhabditis elegans Hypothetical pr...   219   1e-57
U13644-8|AAB52679.1|  471|Caenorhabditis elegans Hypothetical pr...   154   5e-38
AC025726-19|AAK73925.1|  477|Caenorhabditis elegans Mitochondria...    70   1e-12
Z72514-2|CAA96675.2|  422|Caenorhabditis elegans Hypothetical pr...    41   8e-04
Z92970-4|CAB07479.1|  226|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z78065-1|CAD54154.1|  547|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z71265-1|CAA95832.1|  445|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z68270-1|CAA92566.2|  458|Caenorhabditis elegans Hypothetical
           protein ZC410.2 protein.
          Length = 458

 Score =  219 bits (536), Expect = 1e-57
 Identities = 107/229 (46%), Positives = 144/229 (62%)
 Frame = -3

Query: 727 LVDLASKHFSGLKNSACDVELTPCRYTGSEIRVRDDSMPLAHVAIAVEGAGWTDADNIPL 548
           +V +A K+F  LK+     E  P  Y+  E+R     +P+ + A+ VEG  WT  DN+ L
Sbjct: 224 IVKMAEKYFGELKHGDSSTEFVPATYSPCEVRGDIPDLPMLYGAMVVEGVSWTHEDNLAL 283

Query: 547 MVANTLIGAWDRSQGGGANNASYLARAASVGNLCHSFQSFNTCYKDTGLWGIYFVAESLQ 368
           MVANTL+G +DR +G G N  + LA   S       FQSFNTCYK+TGL G YFVA    
Sbjct: 284 MVANTLMGEYDRMRGFGVNAPTRLAEKLSQDAGIEVFQSFNTCYKETGLVGTYFVAAPES 343

Query: 367 LDDMLYNIQKEWMKLCTSVTEGEVERAKNLLKTNMLLQLDGTTPVCEDIGRQMLCYNRRI 188
           +D+++ ++ ++W+ L  ++ E  V+RAK  L TN+LL LDG+TPVCEDIGRQ+LCY RRI
Sbjct: 344 IDNLIDSVLQQWVWLANNIDEAAVDRAKRSLHTNLLLMLDGSTPVCEDIGRQLLCYGRRI 403

Query: 187 PIHELDARIESVTVQNVRDVCYKYLFDRCPAVAAVGPTEGLPDYTRIRG 41
           P  EL ARIES+TVQ +RDVC +   +   + A VG T+  P    I G
Sbjct: 404 PTPELHARIESITVQQLRDVCRRVFLEGQVSAAVVGKTQYWPVNEEIHG 452


>U13644-8|AAB52679.1|  471|Caenorhabditis elegans Hypothetical
           protein F56D2.1 protein.
          Length = 471

 Score =  154 bits (374), Expect = 5e-38
 Identities = 86/237 (36%), Positives = 127/237 (53%), Gaps = 5/237 (2%)
 Frame = -3

Query: 718 LASKHFSGLKNSACDV--ELTPCRYTGSEIRVRDDSMPLAHVAIAVEGAGWTDADNIPLM 545
           LA K+F  L N       ++   R+TGSE R R+D++P  + A AVEG G+   D + L 
Sbjct: 234 LADKYFGDLSNEYPRKVPQVDGTRFTGSEYRYRNDNVPHMYAAFAVEGVGYAHKDALALQ 293

Query: 544 VANTLIGAWDRSQGGGANNASYLARAASVGNLCHSFQSFNTCYKDTGLWGIYFVAESLQL 365
           +AN  IG WD +       AS L +     +  H+ Q FN  YKDTGL+GIYFVA++  L
Sbjct: 294 IANQFIGQWDVTHATSRTAASRLVQKIGHDHGVHNLQHFNINYKDTGLFGIYFVADAHDL 353

Query: 364 DD---MLYNIQKEWMKLCTSVTEGEVERAKNLLKTNMLLQLDGTTPVCEDIGRQMLCYNR 194
           +D   ++ ++  EW  L ++ TE EV  AKN  +TN+   L+  T       +++L    
Sbjct: 354 NDTSGIMKSVAHEWKHLASAATEEEVAMAKNQFRTNLYQNLETNTQKAGFNAKELLYTGN 413

Query: 193 RIPIHELDARIESVTVQNVRDVCYKYLFDRCPAVAAVGPTEGLPDYTRIRGGMYWVR 23
              + EL+A+I+ V    VR+   ++++DR  A   VG TE  P+Y   R GM W R
Sbjct: 414 LRQLSELEAQIQKVDAGAVREAISRHVYDRDLAAVGVGRTEAFPNYALTRAGMSWWR 470


>AC025726-19|AAK73925.1|  477|Caenorhabditis elegans Mitochondrial
           processing peptidasealpha protein 1 protein.
          Length = 477

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 53/218 (24%), Positives = 101/218 (46%), Gaps = 12/218 (5%)
 Frame = -3

Query: 676 DVELTPCRYTGSEIRVRDD------SMP---LAHVAIAVEGAGWTDADNIPLMVANTLIG 524
           +++ +  +YTG E+R+  D        P   L+HV + +EG  + D D +   V  +L+G
Sbjct: 243 EIDESRAQYTGGELRLDTDLTKLTIGKPYPLLSHVVLGLEGCSYKDEDFVAFCVLQSLLG 302

Query: 523 AWDRSQGGGANNASYLARAASVGNLCH---SFQSFNTCYKDTGLWGIYFVAESLQLDDML 353
                  GG     Y      + N  H   S  + N  Y D+G++ +   +    ++D L
Sbjct: 303 GGGAFSAGGPGKGMYARMYTELMNRHHWIYSAIAHNHSYSDSGVFTVTASSPPENINDAL 362

Query: 352 YNIQKEWMKLCTSVTEGEVERAKNLLKTNMLLQLDGTTPVCEDIGRQMLCYNRRIPIHEL 173
             +  + ++L   V   E+ RA+  L++++++ L+    + ED+ RQ+L +  R    E 
Sbjct: 363 ILLVHQILQLQQGVEPTELARARTQLRSHLMMNLEVRPVLFEDMVRQVLGHGDRKQPEEY 422

Query: 172 DARIESVTVQNVRDVCYKYLFDRCPAVAAVGPTEGLPD 59
             +IE VT  ++  V  + L  + P++   G  + L D
Sbjct: 423 AEKIEKVTNSDIIRVTERLLASK-PSLVGYGDIKKLKD 459


>Z72514-2|CAA96675.2|  422|Caenorhabditis elegans Hypothetical
           protein T10B10.2 protein.
          Length = 422

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 32/103 (31%), Positives = 45/103 (43%)
 Frame = -3

Query: 652 YTGSEIRVRDDSMPLAHVAIAVEGAGWTDADNIPLMVANTLIGAWDRSQGGGANNASYLA 473
           Y G E+R RD     AHV +A EGA   +     L     L+ A   S     N  +   
Sbjct: 236 YKGGEVR-RDADSKYAHVIVAGEGAAGNNTK--ALATQAVLLTALGNSSPVKFNTGTTGV 292

Query: 472 RAASVGNLCHSFQSFNTCYKDTGLWGIYFVAESLQLDDMLYNI 344
            A +VG    S  +F   + D+GL G+Y V E  Q +  + N+
Sbjct: 293 IAKAVGQN-GSASAFQAVHADSGLAGVYLVVEGSQANQAVSNV 334


>Z92970-4|CAB07479.1|  226|Caenorhabditis elegans Hypothetical
           protein H06O01.4 protein.
          Length = 226

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/32 (34%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
 Frame = -3

Query: 298 VERAKNLLKTNMLLQ--LDGTTPVCEDIGRQM 209
           ++R+  ++ T+++++  LDG TP C+D+ R+M
Sbjct: 166 LDRSATVVLTSIIIEQVLDGKTPDCDDLFRKM 197


>Z78065-1|CAD54154.1|  547|Caenorhabditis elegans Hypothetical
           protein T09E8.1d protein.
          Length = 547

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 445 GRGCPLRQHALGMKHYWHHHLESGPRH 525
           G G P      G  H+ HHHL   PRH
Sbjct: 23  GGGSPTSDQN-GNSHHHHHHLPPAPRH 48


>Z71265-1|CAA95832.1|  445|Caenorhabditis elegans Hypothetical
           protein M05B5.1 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/32 (34%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
 Frame = -3

Query: 298 VERAKNLLKTNMLLQ--LDGTTPVCEDIGRQM 209
           ++R+  ++ T+++++  LDG TP C+D+ R+M
Sbjct: 355 LDRSATVVLTSIIIEQVLDGKTPDCDDLFRKM 386


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,872,027
Number of Sequences: 27780
Number of extensions: 324123
Number of successful extensions: 874
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)