Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10d15
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    24   1.3  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           24   1.3  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    24   1.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.7  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 225 SSQTGVVPSSCKSMLVLSKFLARSTSPSVTDVQSFIHSFWMLY 353
           S++ GV  +    M+V + FLA +T+ +   +Q  +  FW+ +
Sbjct: 457 SNKYGVCHADDAYMVVDTPFLASTTTTNDIKMQKVLIDFWVSF 499


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 225 SSQTGVVPSSCKSMLVLSKFLARSTSPSVTDVQSFIHSFWMLY 353
           S++ GV  +    M+V + FLA +T+ +   +Q  +  FW+ +
Sbjct: 457 SNKYGVCHADDAYMVVDTPFLASTTTTNDIKMQKVLIDFWVSF 499


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 646 GSEIRVRDDSMPLAHVAIAVEGAGWTDADNIP 551
           GS++ +R+D  P   + +  +GA   D+D  P
Sbjct: 95  GSQLAMRNDRSPSYSMQVPQQGASIDDSDPDP 126


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 646 GSEIRVRDDSMPLAHVAIAVEGAGWTDADNIP 551
           GS++ +R+D  P   + +  +GA   D+D  P
Sbjct: 543 GSQLAMRNDRSPSYSMQVPQQGASIDDSDPDP 574


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,008
Number of Sequences: 438
Number of extensions: 3524
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)